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Table 2 Identified regulatory genes correlated with metabolites.

From: Correlation Network Analysis reveals a sequential reorganization of metabolic and transcriptional states during germination and gene-metabolite relationships in developing seedlings of Arabidopsis

Locus

Metabolite

r= †

Gene Symbol

Gene Description†

Transcription factors

AT1G30970

Sucrose

0.9672

SUF4

Suppressor of Frigida 4

AT2G20180

Sucrose

0.9493

PIF1

Myc-related bHLH transcription factor

AT2G24500

Sucrose

0.9628

FZF

C2H2 zinc finger protein FZF

AT2G25930

unkM7.9

-0.9752

ELF3

Early Flowering 3

AT2G28350

unkM7.9

-0.9667

ARF10

Auxin Response Factor 10

AT2G31370

fumarate -

0.9495

POSF21

bZIP transcription factor POSF21

AT2G43010

unkM1.85

-0.9529

PIF4

Nuclear localized bHLH protein that interacts with active PhyB

AT3G15030

unkS7.37

-0.9586

TCP4

Arabidopsis thaliana TCP

Family transcription factor

AT3G24650

Sucrose

0.9721

ABI3

Homologous to the maize transcription factor Viviparous-1.

AT4G14550

unkM1.85

-0.9588

SLR/IAA14

IAA14 is a member of the Aux/IAA protein family. Solitary Root locus.

AT4G35570

Sucrose

0.9803

HMGB5

High Mobility Group B 5

AT5G17800

Sucrose

0.977

ATMYB56

Member of the R2R3 factor gene family

Kinases &Receptors

AT1G09570

Sucrose

0.9777

PHYA

Phytochrome A

AT4G16250

Sucrose

0.9581

PHYD

Phytochrome D

AT3G16030

alanine

-

0.9519

CES101

Callus Expression of RBCS

DNA/RNA binding

AT1G61040

Sucrose

0.9495

VIP5

Vernalization Independence 5 putative heterogeneous nuclear ribonucleoprotein

AT2G33410

Sucrose

0.9771

  

AT2G37020

Sucrose

0.9522

 

DNA binding, Chloroplast

AT3G16810

Sucrose

0.9735

APUM24

Arabidopsis Pumilio 24

AT4G14520

Sucrose

0.9625

 

Homologous to the DNA-directed RNA polymerase II subunit (At5g59180)

AT4G25500

Sucrose

0.9721

ATRSP35

arginine/serine-rich splicing factor

AT4G36020

Sucrose

0.9577

CSDP1

Cold shock domain protein

AT5G07290

Sucrose

0.9538

AML4

ARABIDOPSIS MEI2-LIKE 4

AT5G14270

glutamine

-0.9566

ATBET9

Arabidopsis thaliana Bromodomain and Extra terminal Domain protein 9

AT5G38890

Sucrose

0.9898

 

Exoribonuclease-related

AT5G53180

fumarate -

0.9593

ATPTB2

Polypyrimidine tract-binding (PTB) Protein

  1. † Pearson correlation coefficients based on a false discovery rate at a significance threshold < 0.05. The sign gives the direction of correlation.