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Table 2 Predicted E2F-target genes from ~12K-size network that overlaps with previous studies by Ramirz-Parra et al. [30] and Vandepoele et al. [31].

From: Identification of transcription factor's targets using tissue-specific transcriptomic data in Arabidopsis thaliana

  Locus ID Symbol Annotation [30] [31]
1 At1g08130 ATLIG1 DNA recombination / DNA repair / DNA replication -
2 At1g07370 PCNA1 Regulation of DNA replication and cell cycle -
3 At1g67630 POLA2 DNA synthesis and replication
4 At2g07690 - DNA synthesis and replication -
5 At5g66750 CHR1 Transcriptional control/chromatin modification -
6 At1g78650 POLD3 DNA or RNA metabolism/ transferase activity
7 At4g14700 ORC1A Cell cycle, Replication control, DNA synthesis -
8 At1g09450 - N-terminal protein myristoylation/ protein amino acidPhosphorylation -
9 At2g40550 ETG1 DNA replication
10 At1g67320 - DNA replication, synthesis of RNA primer -
11 At1g44900 - DNA synthesis and replication, cell cycle control
12 At1g69770 CMT3 Chromatin silencing / DNA methylation -
13 At2g21790 RNR1 DNA synthesis and replication
14 At2g16440 - DNA replication initiation -
15 At5g38110 ASF1B Transcriptional control
16 At5g52950 ATIM Putative protein -
17 At5g18620 CHR17 Transcriptional control, chromatin modification
18 At5g52910 ATIM Regulation of circadian rhythm
19 At2g24490 RPA2 Replication protein A-like -
20 At2g29570 PCNA2 Error-prone postreplication DNA repair / replication -
21 At2g31270 CDT1A Chloroplast organization / DNA replication -
22 At3g02820 - Response to DNA damage stimulus / cell cycle -
23 At3g18630 - DNA repair -
24 At3g25100 CDC45 Cell division control protein -
25 At5g49010 SLD5 DNA replication initiation / GINS complex -
26 At5g49160 MET1 DNA or RNA metabolism / other cellular processes -
27 At5g62410 SMC2 Cell organization / DNA or RNA metabolism -
28 At5g63960 - DNA or RNA metabolism / nucleobase, nucleoside, nucleotide and nucleic acid metabolic process -
29 At5g67100 ICU2 Negative regulation of flower development / leaf morphogenesis -
30 At1g35530 - helicase activity/ hydrolase activity / DNA binding -
31 At3g02920 - nucleic acid binding -
32 At3g27640 - nucleotide binding -
33 At5g06590 - Unknown -
34 At5g63920 - DNA metabolic process / DNA unwinding duringReplication -