Applied Method | Network Size | Confirmed Edges | Ratio | |
---|---|---|---|---|
Pearson Correlation (Cutoff=0.70) | 35,253/71,417 | 25/36 | 7.09e-4/5.04e-4 | |
Causal Linear Regression Model | 30,000/59,557 | 5/16 | 1.66e-4/2.68e-4 | |
Graphical Gaussian Model | GeneNet: Static method | 30,000/68,624 | 9/10 | 3.00e-4/1.46e-4 |
 | GeneNet: Dynamic Method | 30,000/68,658 | 9/10 | 3.00e-4/1.45e-4 |
Meta-analysis (Microarray data partition) | Tissue-wide partition | 12,300/59,676 | 35/57 | 28.5e-4/9.55e-4 |
 | Experiment-wide partition | 37,850/56,775 | 14/18 | 3.96e-4/3.17e-4 |
 | Development-based partition | 37,850/57,339 | 18/22 | 4.75e-4/3.84e-4 |