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Table 4 Genotype distributions of selected 20 SNPs in Chromosome 14.

From: Shrunken methodology to genome-wide SNPs selection and construction of SNPs networks

 

Control Group

Disease Group

SNPs

AA

Aa

aa

Missing

AA

Aa

aa

Missing

rs12434822

0.4391

0.4096

0.1513

0.0000

0.3000

0.5111

0.1889

0.0000

rs1952415

0.5055

0.4354

0.0591

0.0000

0.6185

0.2852

0.0963

0.0000

rs12050360

0.5424

0.3985

0.0591

0.0000

0.6519

0.2889

0.0592

0.0000

rs2248160

0.8155

0.1734

0.0111

0.0000

0.9000

0.1000

0.0000

0.0000

rs7146149

0.4760

0.4354

0.0812

0.0074

0.6174

0.3185

0.0704

0.0037

rs6573113

0.7232

0.2399

0.0369

0.0000

0.6037

0.3556

0.0370

0.0037

rs7560

0.6421

0.2878

0.0664

0.0037

0.5037

0.4000

0.0963

0.0000

rs1950902

0.6199

0.3506

0.0295

0.0000

0.7074

0.2519

0.0407

0.0000

rs11626809

0.8044

0.1882

0.0074

0.0000

0.7000

0.2889

0.0111

0.0000

rs1950764

0.7454

0.2398

0.0148

0.0000

0.6370

0.3445

0.0185

0.0000

rs11620883

0.8155

0.1808

0.0037

0.0000

0.9333

0.0630

0.0037

0.0000

rs3742837

0.6679

0.3026

0.0295

0.0000

0.5370

0.4222

0.0408

0.0000

rs8006322

0.3653

0.5388

0.0959

0.0000

0.4481

0.3889

0.1630

0.0000

rs12589063

0.3911

0.4428

0.1661

0.0000

0.2445

0.5370

0.2037

0.0148

rs7146193

0.3948

0.4465

0.1587

0.0000

0.2445

0.5481

0.2074

0.0000

rs8016079

0.7048

0.2731

0.0221

0.0000

0.8408

0.1481

0.0111

0.0000

rs12589195

0.6199

0.3284

0.0517

0.0000

0.5148

0.4482

0.0370

0.0000

rs7157079

0.8413

0.1550

0.0037

0.0000

0.9407

0.0593

0.0000

0.0000

rs11847484

0.7085

0.2767

0.0148

0.0000

0.8222

0.1704

0.0074

0.0000

rs1152781

0.5978

0.3136

0.0886

0.0000

0.4630

0.4555

0.0815

0.0000

  1. Illustration of genotype distributions of selected 20 SNPs in Chromosome 14 of Parkinson disease genome-wide data set when filter out those SNPs whose missing percentage is >1%. The first column is the ID number of SNP. In Control/Disease group, major/major allele is represented by AA, major/minor is represented by Aa and minor/minor allele is represented by aa. Missing values under < 1% are also considered. Each distribution of the above four category is indicated by their distribution percentage in all samples.