From: Is RNA-dependent RNA polymerase essential for transposon control?
Par. | Description | Value | Units |
---|---|---|---|
j | Integration of new transposon | 0.1 | hr-1 |
f | Fraction of successful integration | 0.1 | - |
v ta | Transcription of active transposons | 16 | hr-1 |
v ts | Transcription of silenced transposons | 1.6 | hr-1 |
t m | Export of mRNA from nucleus | 0.45 | hr-1 |
t an | Export of asRNA from nucleusa | 0.45 | hr-1 |
q | VLP production (proteins etc) | 1 · 10-5 | #mol-1 hr-1 |
d v | Decay of VLP | 2.0 | hr-1 |
u | Activation of silenced transposon | 0.02 | hr-1 |
h b | Basal heterochromatin formation | 0.01 | hr-1 |
h s | siRNA induced heterochromatin formation | 0.001 | #mol-1 hr-1 |
p n | Rate of dsRNA synthesis from nuclear RNA | 0.002 | hr-1 |
p nx | dsRNA synthesis from mRNA and asRNAa, h | 2 · 10-4 | #mol-1 hr-1 |
d r | Decay rate nuclear RNA | 0.28 | hr-1 |
p c | Rate of dsRNA synthesis from mRNA | 0.002 | hr-1 |
p cx | dsRNA synthesis from mRNA and asRNAa | 2.5 · 10-4 | #mol-1 hr-1 |
p cxx | dsRNA synthesis from hairpin mRNAh | 0.002 | hr-1 |
g | Primed amplification rate | 0.002 | #mol-1 hr-1 |
b | RISC activity | 0.008 | #mol-1 hr-1 |
d m | Decay rate nuclear/cytoplasmic mRNA | 0.14 | hr-1 |
g s | Rate of dsRNA cleavage by Dicer | 2.0 | hr-1 |
n | Number of siRNAs cleaved from single dsRNA | 10 | - |
d s | Decay siRNA | 2.8 | hr-1 |
v s | Degradation rate by RNAse | 800 | #mol-1 hr-1 |
k s | Saturation constant | 5.0 | #mol |