TY - JOUR AU - Oberhardt, M. A. AU - Palsson, B. O. AU - Papin, J. A. PY - 2009 DA - 2009// TI - Applications of genome-scale metabolic reconstructions JO - Mol Syst Biol VL - 5 UR - https://doi.org/10.1038/msb.2009.77 DO - 10.1038/msb.2009.77 ID - Oberhardt2009 ER - TY - JOUR AU - Feist, A. M. AU - Palsson, B. O. PY - 2008 DA - 2008// TI - The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli JO - Nat Biotech VL - 26 UR - https://doi.org/10.1038/nbt1401 DO - 10.1038/nbt1401 ID - Feist2008 ER - TY - JOUR AU - Thiele, I. AU - Palsson, B. O. PY - 2010 DA - 2010// TI - A protocol for generating a high-quality genome-scale metabolic reconstruction JO - Nat Protoc VL - 5 UR - https://doi.org/10.1038/nprot.2009.203 DO - 10.1038/nprot.2009.203 ID - Thiele2010 ER - TY - JOUR AU - Edwards, J. S. AU - Palsson, B. O. PY - 1999 DA - 1999// TI - Systems properties of the Haemophilus influenzae Rd metabolic genotype JO - Journal of Biological Chemistry VL - 274 UR - https://doi.org/10.1074/jbc.274.25.17410 DO - 10.1074/jbc.274.25.17410 ID - Edwards1999 ER - TY - JOUR AU - Reed, J. L. AU - Vo, T. D. AU - Schilling, C. H. AU - Palsson, B. O. PY - 2003 DA - 2003// TI - An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR) JO - Genome Biology VL - 4 UR - https://doi.org/10.1186/gb-2003-4-9-r54 DO - 10.1186/gb-2003-4-9-r54 ID - Reed2003 ER - TY - JOUR AU - Forster, J. AU - Famili, I. AU - Fu, P. C. AU - Palsson, B. O. AU - Nielsen, J. PY - 2003 DA - 2003// TI - Genome-Scale Reconstruction of the Saccharomyces cerevisiae Metabolic Network JO - Genome Research VL - 13 UR - https://doi.org/10.1101/gr.234503 DO - 10.1101/gr.234503 ID - Forster2003 ER - TY - JOUR AU - Duarte, N. C. AU - Becker, S. A. AU - Jamshidi, N. AU - Thiele, I. AU - Mo, M. L. AU - Vo, T. D. AU - Srivas, R. AU - Palsson, B. O. PY - 2007 DA - 2007// TI - Global reconstruction of the human metabolic network based on genomic and bibliomic data JO - Proc Natl Acad Sci USA VL - 104 UR - https://doi.org/10.1073/pnas.0610772104 DO - 10.1073/pnas.0610772104 ID - Duarte2007 ER - TY - JOUR AU - Lewis, N. E. AU - Schramm, G. AU - Bordbar, A. AU - Schellenberger, J. AU - Andersen, M. P. AU - Cheng, J. K. AU - Patel, N. AU - Yee, A. AU - Lewis, R. A. AU - Eils, R. AU - Konig, R. AU - Palsson, B. O. PY - 2010 DA - 2010// TI - Large-scale in silico modeling of metabolic interactions between cell types in the human brain JO - Nat Biotechnol VL - 28 UR - https://doi.org/10.1038/nbt.1711 DO - 10.1038/nbt.1711 ID - Lewis2010 ER - TY - JOUR AU - Gille, C. AU - Bolling, C. AU - Hoppe, A. AU - Bulik, S. AU - Hoffmann, S. AU - Hubner, K. AU - Karlstadt, A. AU - Ganeshan, R. AU - Konig, M. AU - Rother, K. AU - Weidlich, M. AU - Behre, J. AU - Holzhutter, H. G. PY - 2010 DA - 2010// TI - HepatoNet1: a comprehensive metabolic reconstruction of the human hepatocyte for the analysis of liver physiology JO - Mol Syst Biol VL - 6 UR - https://doi.org/10.1038/msb.2010.62 DO - 10.1038/msb.2010.62 ID - Gille2010 ER - TY - JOUR AU - Jerby, L. AU - Shlomi, T. AU - Ruppin, E. PY - 2010 DA - 2010// TI - Computational reconstruction of tissue-specific metabolic models: application to human liver metabolism JO - Mol Syst Biol VL - 6 UR - https://doi.org/10.1038/msb.2010.56 DO - 10.1038/msb.2010.56 ID - Jerby2010 ER - TY - JOUR AU - Chang, R. L. AU - Xie, L. AU - Bourne, P. E. AU - Palsson, B. O. PY - 2010 DA - 2010// TI - Drug off-target effects predicted using structural analysis in the context of a metabolic network model JO - PLoS Comput Biol VL - 6 UR - https://doi.org/10.1371/journal.pcbi.1000938 DO - 10.1371/journal.pcbi.1000938 ID - Chang2010 ER - TY - JOUR AU - Bordbar, A. AU - Lewis, N. E. AU - Schellenberger, J. AU - Palsson, B. O. AU - Jamshidi, N. PY - 2010 DA - 2010// TI - Insight into human alveolar macrophage and M. tuberculosis interactions via metabolic reconstructions JO - Mol Syst Biol VL - 6 UR - https://doi.org/10.1038/msb.2010.68 DO - 10.1038/msb.2010.68 ID - Bordbar2010 ER - TY - JOUR AU - Rapoport, T. A. AU - Heinrich, R. AU - Jacobasch, G. AU - Rapoport, S. PY - 1974 DA - 1974// TI - A linear steady-state treatment of enzymatic chains. A mathematical model of glycolysis of human erythrocytes JO - Eur J Biochem VL - 42 UR - https://doi.org/10.1111/j.1432-1033.1974.tb03320.x DO - 10.1111/j.1432-1033.1974.tb03320.x ID - Rapoport1974 ER - TY - JOUR AU - Brumen, M. AU - Heinrich, R. PY - 1984 DA - 1984// TI - A metabolic osmotic model of human erythrocytes JO - Biosystems VL - 17 UR - https://doi.org/10.1016/0303-2647(84)90006-6 DO - 10.1016/0303-2647(84)90006-6 ID - Brumen1984 ER - TY - JOUR AU - Joshi, A. AU - Palsson, B. O. PY - 1989 DA - 1989// TI - Metabolic dynamics in the human red cell. Part I--A comprehensive kinetic model JO - Journal of Theoretical Biology VL - 141 UR - https://doi.org/10.1016/S0022-5193(89)80233-4 DO - 10.1016/S0022-5193(89)80233-4 ID - Joshi1989 ER - TY - JOUR AU - Mulquiney, P. J. AU - Bubb, W. A. AU - Kuchel, P. W. PY - 1999 DA - 1999// TI - Model of 2,3-bisphosphoglycerate metabolism in the human erythrocyte based on detailed enzyme kinetic equations: in vivo kinetic characterization of 2,3-bisphosphoglycerate synthase/phosphatase using 13C and 31P NMR JO - Biochem J VL - 342 UR - https://doi.org/10.1042/bj3420567 DO - 10.1042/bj3420567 ID - Mulquiney1999 ER - TY - JOUR AU - Schauer, M. AU - Heinrich, R. AU - Rapoport, S. M. PY - 1981 DA - 1981// TI - Mathematische Modellierung der Glykolyse und des Adeninnukleotidstoffwechsels menschlicher Erythrozyten JO - Acta Biological er Medica Germanica VL - 40 ID - Schauer1981 ER - TY - JOUR AU - Jamshidi, N. AU - Edwards, J. S. AU - Fahland, T. AU - Church, G. M. AU - Palsson, B. O. PY - 2001 DA - 2001// TI - Dynamic simulation of the human red blood cell metabolic network JO - Bioinformatics VL - 17 UR - https://doi.org/10.1093/bioinformatics/17.3.286 DO - 10.1093/bioinformatics/17.3.286 ID - Jamshidi2001 ER - TY - JOUR AU - Kinoshita, A. AU - Tsukada, K. AU - Soga, T. AU - Hishiki, T. AU - Ueno, Y. AU - Nakayama, Y. AU - Tomita, M. AU - Suematsu, M. PY - 2007 DA - 2007// TI - Roles of hemoglobin Allostery in hypoxia-induced metabolic alterations in erythrocytes: simulation and its verification by metabolome analysis JO - J Biol Chem VL - 282 UR - https://doi.org/10.1074/jbc.M610717200 DO - 10.1074/jbc.M610717200 ID - Kinoshita2007 ER - TY - JOUR AU - Raftos, J. E. AU - Whillier, S. AU - Kuchel, P. W. PY - 2010 DA - 2010// TI - Glutathione synthesis and turnover in the human erythrocyte: alignment of a model based on detailed enzyme kinetics with experimental data JO - J Biol Chem VL - 285 UR - https://doi.org/10.1074/jbc.M109.067017 DO - 10.1074/jbc.M109.067017 ID - Raftos2010 ER - TY - JOUR AU - Roux-Dalvai, F. AU - Gonzalez de Peredo, A. AU - Simo, C. AU - Guerrier, L. AU - Bouyssie, D. AU - Zanella, A. AU - Citterio, A. AU - Burlet-Schiltz, O. AU - Boschetti, E. AU - Righetti, P. G. AU - Monsarrat, B. PY - 2008 DA - 2008// TI - Extensive analysis of the cytoplasmic proteome of human erythrocytes using the peptide ligand library technology and advanced mass spectrometry JO - Mol Cell Proteomics VL - 7 UR - https://doi.org/10.1074/mcp.M800037-MCP200 DO - 10.1074/mcp.M800037-MCP200 ID - Roux-Dalvai2008 ER - TY - JOUR AU - Pasini, E. M. AU - Kirkegaard, M. AU - Mortensen, P. AU - Lutz, H. U. AU - Thomas, A. W. AU - Mann, M. PY - 2006 DA - 2006// TI - In-depth analysis of the membrane and cytosolic proteome of red blood cells JO - Blood VL - 108 UR - https://doi.org/10.1182/blood-2005-11-007799 DO - 10.1182/blood-2005-11-007799 ID - Pasini2006 ER - TY - JOUR AU - Low, T. Y. AU - Seow, T. K. AU - Chung, M. C. PY - 2002 DA - 2002// TI - Separation of human erythrocyte membrane associated proteins with one-dimensional and two-dimensional gel electrophoresis followed by identification with matrix-assisted laser desorption/ionization-time of flight mass spectrometry JO - Proteomics VL - 2 UR - https://doi.org/3.0.CO;2-N DO - 3.0.CO;2-N ID - Low2002 ER - TY - JOUR AU - Goodman, S. R. AU - Kurdia, A. AU - Ammann, L. AU - Kakhniashvili, D. AU - Daescu, O. PY - 2007 DA - 2007// TI - The human red blood cell proteome and interactome JO - Exp Biol Med (Maywood) VL - 232 UR - https://doi.org/10.3181/0706-MR-156 DO - 10.3181/0706-MR-156 ID - Goodman2007 ER - TY - JOUR AU - Zhang, Y. AU - Thiele, I. AU - Weekes, D. AU - Li, Z. AU - Jaroszewski, L. AU - Ginalski, K. AU - Deacon, A. M. AU - Wooley, J. AU - Lesley, S. A. AU - Wilson, I. A. AU - Palsson, B. AU - Osterman, A. AU - Godzik, A. PY - 2009 DA - 2009// TI - Three-dimensional structural view of the central metabolic network of Thermotoga maritima JO - Science VL - 325 UR - https://doi.org/10.1126/science.1174671 DO - 10.1126/science.1174671 ID - Zhang2009 ER - TY - JOUR AU - Vo, T. D. AU - Greenberg, H. J. AU - Palsson, B. O. PY - 2004 DA - 2004// TI - Reconstruction and functional characterization of the human mitochondrial metabolic network based on proteomic and biochemical data JO - J Biol Chem VL - 279 UR - https://doi.org/10.1074/jbc.M403782200 DO - 10.1074/jbc.M403782200 ID - Vo2004 ER - TY - JOUR AU - Wiback, S. J. AU - Palsson, B. O. PY - 2002 DA - 2002// TI - Extreme pathway analysis of human red blood cell metabolism JO - Biophysical Journal VL - 83 UR - https://doi.org/10.1016/S0006-3495(02)75210-7 DO - 10.1016/S0006-3495(02)75210-7 ID - Wiback2002 ER - TY - JOUR AU - Mahadevan, R. AU - Schilling, C. H. PY - 2003 DA - 2003// TI - The effects of alternate optimal solutions in constraint-based genome-scale metabolic models JO - Metab Eng VL - 5 UR - https://doi.org/10.1016/j.ymben.2003.09.002 DO - 10.1016/j.ymben.2003.09.002 ID - Mahadevan2003 ER - TY - JOUR AU - Lou, L. L. AU - Clarke, S. PY - 1987 DA - 1987// TI - Enzymatic methylation of band 3 anion transporter in intact human erythrocytes JO - Biochemistry VL - 26 UR - https://doi.org/10.1021/bi00375a008 DO - 10.1021/bi00375a008 ID - Lou1987 ER - TY - JOUR AU - Allan, D. AU - Michell, R. H. PY - 1976 DA - 1976// TI - Production of 1,2-diacylglycerol in human erythrocyte membranes exposed to low concentrations of calcium ions JO - Biochim Biophys Acta VL - 455 UR - https://doi.org/10.1016/0005-2736(76)90052-3 DO - 10.1016/0005-2736(76)90052-3 ID - Allan1976 ER - TY - JOUR AU - Arduini, A. AU - Mancinelli, G. AU - Radatti, G. L. AU - Dottori, S. AU - Molajoni, F. AU - Ramsay, R. R. PY - 1992 DA - 1992// TI - Role of carnitine and carnitine palmitoyltransferase as integral components of the pathway for membrane phospholipid fatty acid turnover in intact human erythrocytes JO - J Biol Chem VL - 267 ID - Arduini1992 ER - TY - JOUR AU - Berridge, M. J. AU - Irvine, R. F. PY - 1984 DA - 1984// TI - Inositol trisphosphate, a novel second messenger in cellular signal transduction JO - Nature VL - 312 UR - https://doi.org/10.1038/312315a0 DO - 10.1038/312315a0 ID - Berridge1984 ER - TY - JOUR AU - Tsukamoto, T. AU - Sonenberg, M. PY - 1979 DA - 1979// TI - Catecholamine regulation of human erythrocyte membrane protein kinase JO - J Clin Invest VL - 64 UR - https://doi.org/10.1172/JCI109491 DO - 10.1172/JCI109491 ID - Tsukamoto1979 ER - TY - JOUR AU - McGee, J. E. AU - Fitzpatrick, F. A. PY - 1986 DA - 1986// TI - Erythrocyte-neutrophil interactions: formation of leukotriene B4 by transcellular biosynthesis JO - Proc Natl Acad Sci USA VL - 83 UR - https://doi.org/10.1073/pnas.83.5.1349 DO - 10.1073/pnas.83.5.1349 ID - McGee1986 ER - TY - JOUR AU - Inoue, K. AU - Ohbora, Y. AU - Yamasawa, K. PY - 1978 DA - 1978// TI - Metabolism of acetaldehyde by human erythrocytes JO - Life Sci VL - 23 UR - https://doi.org/10.1016/0024-3205(78)90268-0 DO - 10.1016/0024-3205(78)90268-0 ID - Inoue1978 ER - TY - CHAP AU - Becker, S. A. AU - Price, N. D. AU - Palsson, P. O. PY - 2006 DA - 2006// TI - Metabolite coupling in genome-scale metabolic networks BT - BMC Bioinformatics ID - Becker2006 ER - TY - CHAP AU - Palsson, B. O. PY - 2006 DA - 2006// BT - Systems biology: properties of reconstructed networks PB - Cambridge University Press CY - New York UR - https://doi.org/10.1017/CBO9780511790515 DO - 10.1017/CBO9780511790515 ID - Palsson2006 ER - TY - JOUR AU - Graham, J. M. AU - Peerson, J. M. AU - Haskell, M. J. AU - Shrestha, R. K. AU - Brown, K. H. AU - Allen, L. H. PY - 2005 DA - 2005// TI - Erythrocyte riboflavin for the detection of riboflavin deficiency in pregnant Nepali women JO - Clin Chem VL - 51 UR - https://doi.org/10.1373/clinchem.2005.055079 DO - 10.1373/clinchem.2005.055079 ID - Graham2005 ER - TY - JOUR AU - Baines, M. AU - Davies, G. PY - 1988 DA - 1988// TI - The evaluation of erythrocyte thiamin diphosphate as an indicator of thiamin status in man, and its comparison with erythrocyte transketolase activity measurements JO - Ann Clin Biochem VL - 25 UR - https://doi.org/10.1177/000456328802500617 DO - 10.1177/000456328802500617 ID - Baines1988 ER - TY - JOUR AU - Agarwal, D. P. AU - Tobar-Rojas, L. AU - Harada, S. AU - Goedde, H. W. PY - 1983 DA - 1983// TI - Comparative study of erythrocyte aldehyde dehydrogenase in alcoholics and control subjects JO - Pharmacol Biochem Behav VL - 18 UR - https://doi.org/10.1016/0091-3057(83)90152-1 DO - 10.1016/0091-3057(83)90152-1 ID - Agarwal1983 ER - TY - JOUR AU - Murakami, K. AU - Kondo, T. AU - Ohtsuka, Y. AU - Fujiwara, Y. AU - Shimada, M. AU - Kawakami, Y. PY - 1989 DA - 1989// TI - Impairment of glutathione metabolism in erythrocytes from patients with diabetes mellitus JO - Metabolism VL - 38 UR - https://doi.org/10.1016/0026-0495(89)90061-9 DO - 10.1016/0026-0495(89)90061-9 ID - Murakami1989 ER - TY - JOUR AU - Prabakaran, S. AU - Wengenroth, M. AU - Lockstone, H. E. AU - Lilley, K. AU - Leweke, F. M. AU - Bahn, S. PY - 2007 DA - 2007// TI - 2-D DIGE analysis of liver and red blood cells provides further evidence for oxidative stress in schizophrenia JO - J Proteome Res VL - 6 UR - https://doi.org/10.1021/pr060308a DO - 10.1021/pr060308a ID - Prabakaran2007 ER - TY - JOUR AU - Dadoly, J. PY - 2007 DA - 2007// TI - The Merck Manual JO - Medical Reference Services Quarterly VL - 26 ID - Dadoly2007 ER - TY - JOUR AU - Shifman, S. AU - Bronstein, M. AU - Sternfeld, M. AU - Pisante-Shalom, A. AU - Lev-Lehman, E. AU - Weizman, A. AU - Reznik, I. AU - Spivak, B. AU - Grisaru, N. AU - Karp, L. AU - Schiffer, R. AU - Kotler, M. AU - Strous, R. D. AU - Swartz-Vanetik, M. AU - Knobler, H. Y. AU - Shinar, E. AU - Beckmann, J. S. AU - Yakir, B. AU - Risch, N. AU - Zak, N. B. AU - Darvasi, A. PY - 2002 DA - 2002// TI - A highly significant association between a COMT haplotype and schizophrenia JO - Am J Hum Genet VL - 71 UR - https://doi.org/10.1086/344514 DO - 10.1086/344514 ID - Shifman2002 ER - TY - JOUR AU - Usaite, R. AU - Patil, K. R. AU - Grotkjaer, T. AU - Nielsen, J. AU - Regenberg, B. PY - 2006 DA - 2006// TI - Global transcriptional and physiological responses of Saccharomyces cerevisiae to ammonium, L-alanine, or L-glutamine limitation JO - Appl Environ Microbiol VL - 72 UR - https://doi.org/10.1128/AEM.00548-06 DO - 10.1128/AEM.00548-06 ID - Usaite2006 ER - TY - JOUR AU - Herrgard, M. J. AU - Lee, B. S. AU - Portnoy, V. AU - Palsson, B. O. PY - 2006 DA - 2006// TI - Integrated analysis of regulatory and metabolic networks reveals novel regulatory mechanisms in Saccharomyces cerevisiae JO - Genome Research VL - 16 UR - https://doi.org/10.1101/gr.4083206 DO - 10.1101/gr.4083206 ID - Herrgard2006 ER - TY - CHAP AU - Wishart, D. S. AU - Knox, C. AU - Guo, A. C. AU - Eisner, R. AU - Young, N. AU - Gautam, B. AU - Hau, D. D. AU - Psychogios, N. AU - Dong, E. AU - Bouatra, S. AU - Mandal, R. AU - Sinelnikov, I. AU - Xia, J. AU - Jia, L. AU - Cruz, J. A. AU - Lim, E. AU - Sobsey, C. A. AU - Shrivastava, S. AU - Huang, P. AU - Liu, P. AU - Fang, L. AU - Peng, J. AU - Fradette, R. AU - Cheng, D. AU - Tzur, D. AU - Clements, M. AU - Lewis, A. AU - De Souza, A. AU - Zuniga, A. AU - Dawe, M. PY - 2009 DA - 2009// TI - HMDB: a knowledgebase for the human metabolome BT - Nucleic Acids Res ID - Wishart2009 ER - TY - CHAP AU - Surgenor, D. M. AU - Bishop, C. W. PY - 1974 DA - 1974// BT - The red blood cell PB - Academic Press CY - New York ID - Surgenor1974 ER - TY - JOUR AU - Orth, J. D. AU - Thiele, I. AU - Palsson, B. O. PY - 2010 DA - 2010// TI - What is flux balance analysis? JO - Nat Biotechnol VL - 28 UR - https://doi.org/10.1038/nbt.1614 DO - 10.1038/nbt.1614 ID - Orth2010 ER - TY - JOUR AU - Becker, S. A. AU - Feist, A. M. AU - Mo, M. L. AU - Hannum, G. AU - Palsson, B. O. AU - Herrgard, M. J. PY - 2007 DA - 2007// TI - Quantitative prediction of cellular metabolism with constraint-based models: The COBRA Toolbox JO - Nat Protocols VL - 2 UR - https://doi.org/10.1038/nprot.2007.99 DO - 10.1038/nprot.2007.99 ID - Becker2007 ER - TY - CHAP AU - Amberger, J. AU - Bocchini, C. A. AU - Scott, A. F. AU - Hamosh, A. PY - 2009 DA - 2009// TI - McKusick's Online Mendelian Inheritance in Man (OMIM) BT - Nucleic Acids Res ID - Amberger2009 ER - TY - CHAP AU - Wishart, D. S. AU - Knox, C. AU - Guo, A. C. AU - Cheng, D. AU - Shrivastava, S. AU - Tzur, D. AU - Gautam, B. AU - Hassanali, M. PY - 2008 DA - 2008// TI - DrugBank: a knowledgebase for drugs, drug actions and drug targets BT - Nucleic Acids Res ID - Wishart2008 ER - TY - JOUR AU - Sigurdsson, M. I. AU - Jamshidi, N. AU - Jonsson, J. J. AU - Palsson, B. O. PY - 2009 DA - 2009// TI - Genome-scale network analysis of imprinted human metabolic genes JO - Epigenetics VL - 4 UR - https://doi.org/10.4161/epi.4.1.7603 DO - 10.4161/epi.4.1.7603 ID - Sigurdsson2009 ER - TY - JOUR AU - Shlomi, T. AU - Cabili, M. N. AU - Ruppin, E. PY - 2009 DA - 2009// TI - Predicting metabolic biomarkers of human inborn errors of metabolism JO - Mol Syst Biol VL - 5 UR - https://doi.org/10.1038/msb.2009.22 DO - 10.1038/msb.2009.22 ID - Shlomi2009 ER -