Table 1 In silico experiments performed to obtain time series data sets on wild-type cells and deletion mutants by following the token flow through the Petri net of Figure 8a
Experiment | Genetic background | Experimental perturbation | Petri net implementation |
|---|---|---|---|
Exp #1 | Wild-type | Addition of organic and inorganic phosphate | token in pi_pp and po_pp |
Exp #2 | Wild-type | Absence of organic and inorganic phosphate | Petri net as shown in Figure 8 |
Exp #3 | Wild-type | Inhibition of transcription/translation | no token in phoA, token in po_pp |
Exp #4 | Δ pstSCAB | Absence of organic and inorganic phosphate | no token in Pst-P |
Exp #5 | Δ pstSCAB | Addition of organic phosphate | no token in Pst-P, token in po_pp |
Exp #6 | Δ pstSCAB | Addition of organic and inorganic phosphate | no token in Pst-P, token in pi_pp and po_pp |
Exp #7 | Δ phoU | Absence of organic and inorganic phosphate | no token in PhoU-I |
Exp #8 | Δ phoR | Absence of organic and inorganic phosphate | no token in PhoR |
Exp #9 | Δ phoB | Absence of organic and inorganic phosphate | no token in PhoB |
Exp #10 | phoR Δ Psite | Absence of organic and inorganic phosphate | no token in PhoR-S |
Exp #11 | phoB Δ Psite | Absence of organic and inorganic phosphate | no token in PhoB-S |