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Table 2 In silic o predictions of the phenotypic features.

From: Genome-scale reconstruction of metabolic network for a halophilic extremophile, Chromohalobacter salexigens DSM 3043

Phenotype (in vivo/in silico) Related Enzymes Related Reactions
Catalase activity (+/+) Catalase (1.11.1.6) rxn87
Citrate activity (+/+) citrate synthase (2.3.3.1) rxn328
Urease activity (+/+) Urease (3.5.1.5) rxn610
Nitrate reduction (+/+) Nitrate reductase (1.7.99.4) rxn216-rxn218
Substrate (in vivo/in silico) Transport Reactions Utilization Reactions
Acetate (+/+) rxn964 rxn527, rxn559, rxn817
Adonitol (-/-) - -
Glycine Betaine (+/+) rxn1112, rxn1113 rxn136, rxn137, rxn243
Butyrate (-/-) - -
Caprylate (-/-) - -
Cellobiose (-/-) - -
Choline (+/+) rxn1004, rxn1005 rxn83, rxn107, rxn580
Citrate (+/+) rxn1007 rxn328, rxn702, rxn726, rxn727
Creatine (-/-) - -
D-fructose (+/+) rxn1079, rxn1080 rxn62, rxn337, rxn433, rxn781
D-galactose (+/+) rxn1091 rxn53
D-glucose (+/+) rxn877, rxn881, rxn882 rxn82, rxn422
DL-glycerate (+/+) rxn1114 rxn64
DL-α-aminobutyrate (-/-) - -
D-mannitol (+/+) rxn1173 rxn33, rxn62
D-mannose (+/+) rxn1161 rxn33, rxn781
D-melibiose (-/-) - -
D-raffinose (-/-) - -
D-ribose (+/+) rxn1274 rxn418
D-sorbitol (+/+) rxn1284 rxn17
L-tartrate (+/+) rxn1312 rxn729
D-trehalose (+/+) rxn1327, rxn1328 rxn562
Dulcitol (galactitol) (+/+) rxn1101 rxn53
D-xylose (+/+) rxn1385 rxn22
Erythritol (+/+) rxn1060 rxn427
Ethanol (+/+) rxn1065 rxn2
Fumarate (+/+) rxn1081 rxn155, rxn156, rxn158 - rxn162, rxn720, rxn753 - rxn755
Galactosamine (-/-) - -
Gluconolactone (-/-) - -
Glutamate (+/+) rxn1109 rxn763, rxn854
Glycerol (+/+) rxn1116 rxn1, rxn429
Glycine (+/+) rxn1118 rxn182, rxn183, rxn257, rxn258, rxn605, rxn695, rxn802, rxn848, rxn859
Inulin (-/-) - -
Lactate (-/-) - -
L-alanine (-/-) - -
L-arabinose (+/+) rxn978 rxn52
L-arginine (+/+) rxn979 rxn275, rxn616, rxn661, rxn753, rxn807
L-asparagine (+/+) rxn981 rxn597
L-fucose (-/-) - -
L-glutamine (+/+) rxn1103 rxn175, rxn184, rxn389, rxn699, rxn806, rxn863, rxn868 - rxn872
L-lysine (+/+) rxn1153 rxn104, rxn814
L-methionine (-/-) - -
L-ornithine (+/+) rxn1209 rxn267, rxn268, rxn750
L-proline (+/+) rxn1248 rxn195, rxn803
L-rhamnose (-/-) - -
L-serine (+/+) rxn1290 rxn37, rxn256, rxn257, rxn297, rxn298, rxn514 - rxn520, rxn721, rxn722, rxn751, rxn799, rxn800
L-threonine (-/-) - -
L-valine (-/-) - -
Malate (+/+) rxn1155 rxn46, rxn47, rxn84, rxn85, rxn720
Malonate (+/+) rxn1156 rxn122
Maltose (+/+) rxn1157 rxn587
Meso-inositol (+/+) rxn1170 rxn96
Oxalate (-/-) - -
Propionate (+/+) rxn1249 rxn433
Putrescine (-/-) - -
Sarcosine (-/-) - -
Succinate (+/+) rxn1305 rxn97, rxn98, rxn156, rxn159, rxn160, rxn163, rxn700, rxn841
Sucrose (+/+) rxn883, rxn884, rxn885 rxn337
Tagatose (+/+) rxn1314 rxn39, rxn439
α-lactose (-/-) - -