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Table 1 Gene Ontology (GO) Annotations to Differentially Expressed Genes

From: How yeast re-programmes its transcriptional profile in response to different nutrient impulses

Significantly Associated Process GO Term p-value Fraction of Differentially Expressed Subset Associated with the GO Term Fraction of Transcriptome Associated with the GO Term
Carbon Catabolite Repression    
Carboxylic metabolic processes 4.07 × 10-21 74/372 344/6353
Aspartate family amino acid metabolic processes 1.09 × 10-6 17/372 48/6353
Glutamine family amino acid metabolic processes 2.35 × 10-4 11/372 27/6353
Methionine family amino acid metabolic processes 1.69 × 10-3 10/372 26/6353
Serine family amino acid metabolic processes 9.85 × 10-3 13/372 37/6353
Purine metabolic processes 2.37 × 10-9 17/372 35/6353
Glycolysis 4.20 × 10-8 13/372 22/6353
Oxidative phosphorylation 4.79 × 10-8 18/372 46/6353
Alcohol catabolic processes 1.19 × 10-7 19/372 54/6353
Energy coupled proton transport 3.81 × 10-7 11/372 17/6353
Nitrogen Catabolite Repression    
glycolysis 3.95 × 10-16 15/369 22/6353
gluconeogenesis 5.85 × 10-6 9/369 15/6353
Proton transport 8.02 × 10-6 11/369 21/6353
Oxidative phosphorylation 2.98 × 10-4 14/369 46/6353
Aspartate family amino acid metabolic process 5.38 × 10-4 14/369 48/6353
Amino acid and derivative metabolic process 4.19 × 10-3 36/369 273/6353