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Table 2 Gene Ontology Enrichment of Transcripts Following Bifurcation

From: How yeast re-programmes its transcriptional profile in response to different nutrient impulses

 

Branch of Down-regulated Transcripts

Branch of Up-regulated Transcripts

Case

Bifurcation Controlling TFs

Process Gene Ontology Terms

p-value

Bifurcation Controlling TFs

Process Gene Ontology Terms

p-value

Carbon Catabolite Repression

Mth1p, Msn2p, Msn4p, Hap2p, Swi4p, Ume6p

ion trans-membrane transporter activity

5.3 × 10-5

Mth1p, Msn2p, Msn4p, Hap2p, Swi4p, Ume6p

Endoplasmic reticulum membrane

4.7 × 10-5

  

G1-specific transcription in mitotic cell cycle

5.0 × 10-3

 

Microtubule associated complex

2.8 × 10-3

  

aerobic respiration

8.4 × 10-5

 

tRNA modification

1.0 × 10-3

  

retrograde transport

8.1 × 10-3

 

Proteasome complex

1.3 × 10-3

Nitrogen Catabolite Repression

Hms1p, Mga1p, Msn1p, Phd1p, Hap2p

ion trans-membrane transport

5.9 × 10-3

Gcr2p

ribosome biogenesis and assembly

2.9 × 10-3