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Table 1 Overview of metabolic pathway databases used

From: Critical assessment of human metabolic pathway databases: a stepping stone for future integration

Database

Export formats used

Versiona

Downloaded from

BiGG

Flat file, SBML

1

http://bigg.ucsd.edu/

EHMN

Excel

2

http://www.ehmn.bioinformatics.ed.ac.uk/

HumanCyc

Flat file

15.0

http://biocyc.org/download.shtml

KEGG

Flat file, KGML

58

ftp://ftp.genome.jp/pub/kegg/

Reactome

MySQL database

36

http://reactome.org/download/index.html

  1. aDownloaded in the first week of May 2011
  2. KGML: KEGG Markup Language; SBML: Systems Biology Markup Language.
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BMC Systems Biology

ISSN: 1752-0509

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