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Table 1 Overview of metabolic pathway databases used

From: Critical assessment of human metabolic pathway databases: a stepping stone for future integration

Database Export formats used Versiona Downloaded from
BiGG Flat file, SBML 1 http://bigg.ucsd.edu/
EHMN Excel 2 http://www.ehmn.bioinformatics.ed.ac.uk/
HumanCyc Flat file 15.0 http://biocyc.org/download.shtml
KEGG Flat file, KGML 58 ftp://ftp.genome.jp/pub/kegg/
Reactome MySQL database 36 http://reactome.org/download/index.html
  1. aDownloaded in the first week of May 2011
  2. KGML: KEGG Markup Language; SBML: Systems Biology Markup Language.