Table 6 Statistics of the pathway database comparison of core metabolic processes
From: Critical assessment of human metabolic pathway databases: a stepping stone for future integration
| Â | Number of (percentage of union) | |||||||
|---|---|---|---|---|---|---|---|---|
| Â | Genes | EC numbers | Metabolites | Reactions | ||||
union | 1723 | -55% | 959 | -32% | 2805 | -40% | 3713 | -47% |
consensus | 264 (15%) | + 2% | 180 (19%) | + 1% | 316 (11%) | + 2% | 144 (4%) | + 1% |
majority score | 875 (51%) | + 9% | 508 (53%) | + 3% | 757 (27%) | + 6% | 674 (18%) | + 4% |
Database | Unique per database (percentage of union) | |||||||
BiGG | 75 (4%) | + 3% | 63 (7%) | + 4% | 276 (10%) | - 1% | 621 (17%) | - 1% |
EHMN | 186 (11%) | + 8% | 125 (13%) | + 7% | 910 (32%) | + 7% | 1129 (30%) | + 4% |
HumanCyc | 70 (4%) | -16% | 62 (6%) | -15% | 243 (9%) | - 7% | 326 (9%) | - 4% |
KEGG | 180 (10%) | + 8% | 45 (5%) | + 4% | 209 (7%) | + 1% | 274 (7%) | + 2% |
Reactome | 19 (1%) | - 3% | 8 (1%) | 0 | 80 (3%) | - 6% | 154 (4%) | - 4% |
Total | 530 (31%) | + 1% | 303 (32%) | 0 | 1718 (61%) | - 6% | 2504 (67%) | - 3% |