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Table 5 Carbon source utilization with respiration as FBA objective function.

From: The evolution of metabolic networks of E. coli

  E. coliK-12 E. coliO157:H7 (EHEC)a E. coli(UPEC)b S. typhimurium
Strain MG1655 W3110 EDL933 Sakai CFT073 UTI89 LT2
Condition O2 No O2 O2 No O2 O2 No O2 O2 No O2 O2 No O2 O2 No O2 O2 No O2
Tested compounds included in models 76 76 76 76 76 76 76 76 76 76 76 76 54 54
True positivec 71 67 74 74 73 72 74 72 71 75 73 70 39 51
True negatived 5 9 2 2 3 4 2 4 5 1 3 6 15 3
False positivee 4 1 1 0 2 2 2 1 3 0 1 0 2 0
False negativef 3 2 2 3 5 5 5 5 6 8 3 3 0 0
  1. aEnterohemorrhagic E. coli (EHEC)
  2. bUropathogenic E. coli (UPEC)
  3. cExperimental = Y
  4. dExperimental = N
  5. eExperimental = N and in silico = Y
  6. fExperimental = Y and in silico = N
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BMC Systems Biology

ISSN: 1752-0509

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