44
|
ZIC1,MITF seg 18 CNV (+)
|
118
|
14
|
6
|
45
|
TBP,MYB,HDAC2 seg 31 CNV (+)
|
77
|
28
|
20
|
46
|
SREBF2,EP300 seg 84 CNV (+)
|
49
|
3
|
2
|
47
|
E2F3,NFYA,SRF seg 30 CNV (+)
|
31
|
5
|
4
|
48
|
TCF7L2 seg 42 CNV (+)
|
30
|
1
|
3
|
54
|
UBP1 seg 16 CNV (+)
|
18
|
1
|
0
|
62
|
APC mutation (+)
|
136
|
17
|
10
|
63
|
APC mutation (-)
|
56
|
3
|
6
|
65
|
CDNK2A mutation (-)
|
43
|
3
|
6
|
66
|
TP53 mutation (-)
|
35
|
11
|
3
|
67
|
BRAF mutation (-)
|
34
|
3
|
3
|
68
|
TP53 mutation (+)
|
33
|
4
|
6
|
69
|
CDKN2A mutation (+)
|
32
|
6
|
3
|
71
|
PTEN mutation (+)
|
20
|
1
|
2
|
72
|
KRAS mutation (-)
|
16
|
1
|
1
|
73
|
BRAF mutation (+)
|
16
|
3
|
1
|
75
|
PTEN mutation (-)
|
13
|
2
|
4
|
76
|
PAX8 methylation (-)
|
67
|
1
|
4
|
77
|
BCR methylation (-)
|
58
|
5
|
10
|
79
|
CCND1,PPARG methylation (-)
|
13
|
4
|
7
|
80
|
COL5A1 methylation (-)
|
10
|
1
|
1
|
83
|
TF group 1 (+)
|
338
|
236
|
48
|
microRNA modules
| | | | |
index
|
drivers/regulators
|
N1
|
N2
|
N3
|
4
|
ZIC1,MITF seg 18 CNV (-)
|
19
|
3
|
5
|
5
|
DNMT1 seg 15 CNV (+)
|
15
|
1
|
2
|
6
|
SRF seg 30 CNV (+)
|
13
|
1
|
1
|
7
|
MAP2K4 seg 66 CNV (-)
|
13
|
2
|
2
|
10
|
TP53 mutation (+)
|
17
|
3
|
3
|
12
|
APC mutation (+)
|
10
|
1
|
1
|
14
|
BCR methylation (-)
|
12
|
1
|
4
|
15
|
SMAD3,BDNF (+)
|
28
|
8
|
10
|
20
|
HIF1A (+)
|
14
|
1
|
2
|