mRNA modules | Â | Â | Â | Â |
---|---|---|---|---|
index | drivers/regulators | N 1 | N 2 | N 3 |
44 | ZIC1,MITF seg 18 CNV (+) | 118 | 14 | 6 |
45 | TBP,MYB,HDAC2 seg 31 CNV (+) | 77 | 28 | 20 |
46 | SREBF2,EP300 seg 84 CNV (+) | 49 | 3 | 2 |
47 | E2F3,NFYA,SRF seg 30 CNV (+) | 31 | 5 | 4 |
48 | TCF7L2 seg 42 CNV (+) | 30 | 1 | 3 |
54 | UBP1 seg 16 CNV (+) | 18 | 1 | 0 |
62 | APC mutation (+) | 136 | 17 | 10 |
63 | APC mutation (-) | 56 | 3 | 6 |
65 | CDNK2A mutation (-) | 43 | 3 | 6 |
66 | TP53 mutation (-) | 35 | 11 | 3 |
67 | BRAF mutation (-) | 34 | 3 | 3 |
68 | TP53 mutation (+) | 33 | 4 | 6 |
69 | CDKN2A mutation (+) | 32 | 6 | 3 |
71 | PTEN mutation (+) | 20 | 1 | 2 |
72 | KRAS mutation (-) | 16 | 1 | 1 |
73 | BRAF mutation (+) | 16 | 3 | 1 |
75 | PTEN mutation (-) | 13 | 2 | 4 |
76 | PAX8 methylation (-) | 67 | 1 | 4 |
77 | BCR methylation (-) | 58 | 5 | 10 |
79 | CCND1,PPARG methylation (-) | 13 | 4 | 7 |
80 | COL5A1 methylation (-) | 10 | 1 | 1 |
83 | TF group 1 (+) | 338 | 236 | 48 |
microRNA modules | Â | Â | Â | Â |
index | drivers/regulators | N1 | N2 | N3 |
4 | ZIC1,MITF seg 18 CNV (-) | 19 | 3 | 5 |
5 | DNMT1 seg 15 CNV (+) | 15 | 1 | 2 |
6 | SRF seg 30 CNV (+) | 13 | 1 | 1 |
7 | MAP2K4 seg 66 CNV (-) | 13 | 2 | 2 |
10 | TP53 mutation (+) | 17 | 3 | 3 |
12 | APC mutation (+) | 10 | 1 | 1 |
14 | BCR methylation (-) | 12 | 1 | 4 |
15 | SMAD3,BDNF (+) | 28 | 8 | 10 |
20 | HIF1A (+) | 14 | 1 | 2 |