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Table 2 Properties of the genome-scale (iRP911) and methylotrophic networks reconstructed for M. extorquens AM1

From: Genome-scale reconstruction and system level investigation of the metabolic network of Methylobacterium extorquensAM1

Properties

GS network

%

Methylotrophic network

% of GS network

Biochemically unique reactions

1139

 

717

62.9%

 

Reversible reactions

578

50.7%

340

58.8%

Metabolites

977

 

722

73.9%

Genes

911

 

706

77.5%

Enzymes

761

 

595

78.2%

 

Protein complexes

83

10.9

65

78.3%

Confidence score of reactions (GS network)

Number

%

Data sources

4

Experimental evidence for enzyme activity

54

4.7%

Biochemical data

4

Spontaneous reaction

 

15

   

3

Experimental evidence for gene function

28

2.5%

Genetic data

2

Genome annotation

 

856

75.2%

Genomic data

2

Evidence from physiology (Transport)

127

11.2%

Physiological data

1

Hypothetical reaction required for modeling

59

5.2%

Modeling data

2.1

Average confidence score of the network

  
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BMC Systems Biology

ISSN: 1752-0509

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