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Table 2 Properties of the genome-scale (iRP911) and methylotrophic networks reconstructed for M. extorquens AM1

From: Genome-scale reconstruction and system level investigation of the metabolic network of Methylobacterium extorquensAM1

Properties GS network % Methylotrophic network % of GS network
Biochemically unique reactions 1139   717 62.9%
  Reversible reactions 578 50.7% 340 58.8%
Metabolites 977   722 73.9%
Genes 911   706 77.5%
Enzymes 761   595 78.2%
  Protein complexes 83 10.9 65 78.3%
Confidence score of reactions (GS network) Number % Data sources
4 Experimental evidence for enzyme activity 54 4.7% Biochemical data
4 Spontaneous reaction   15    
3 Experimental evidence for gene function 28 2.5% Genetic data
2 Genome annotation   856 75.2% Genomic data
2 Evidence from physiology (Transport) 127 11.2% Physiological data
1 Hypothetical reaction required for modeling 59 5.2% Modeling data
2.1 Average confidence score of the network