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Table 1 List of GO biological process terms in each cluster after overlap the results from all datasets.

From: Codon usage variability determines the correlation between proteome and transcriptome fold changes

Cluster 1 translation biosynthetic process cellular biosynthetic process cellular protein metabolic process protein metabolic process
Cluster 2 Transport establishment of localization localization transmembrane transport glutamine family amino acid catabolic process
Cluster 3 amine transport establishment of localization amino acid transport transmembrane transport carboxylic acid transport
Cluster 4 GPI anchor biosynthetic process GPI anchor metabolic process phosphoinositide biosynthetic process lipoprotein metabolic process lipoprotein biosynthetic process
Cluster 6 small molecule metabolic process small molecule biosynthetic process carboxylic acid metabolic process oxoacid metabolic process organic acid metabolic process
Cluster 7 small molecule metabolic process small molecule biosynthetic process cellular nitrogen compound biosynthetic process fatty acid catabolic process organic acid catabolic process
Cluster 8 telomere maintenance via recombination     
Cluster 10 telomere maintenance via recombination     
Cluster 11 small molecule metabolic process small molecule biosynthetic process heterocycle metabolic process cellular nitrogen compound biosynthetic process cellular ketone metabolic process
Cluster 12 endocytosis     
Cluster 13 transposition, RNA-mediated transposition cellular process loss of chromatin silencing cofactor biosynthetic process
Cluster 14 transposition, RNA-mediated transposition regulation of biological process regulation of cellular process protein amino acid phosphorylation
Cluster 16 ribosome biogenesis ribonucleoprotein complex biogenesis rRNA metabolic process rRNA processing ncRNA processing
Cluster 17 cellular component biogenesis nucleic acid metabolic process macromolecular complex subunit organization ribonucleoprotein complex biogenesis RNA metabolic process
Cluster 18 nucleic acid metabolic process cellular response to stress cellular component organization nucleobase, nucleoside, nucleotide and nucleic acid metabolic process response to DNA damage stimulus
Cluster 19 cell cycle cell cycle process nucleic acid metabolic process cellular component organization cell cycle phase
Cluster 20 regulation of biological process biological regulation M phase regulation of cellular process cell cycle phase
  1. *the genes in clusters 5, 9 and 15 were annotated to the GO term "biological process unknown"