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Table 1 Number of elements and reactions of the model

From: A Boolean probabilistic model of metabolic adaptation to oxygen in relation to iron homeostasis and oxidative stress

642 Elements:

 

188

Genes

304

Proteins and protein complexes

125

Other chemical components and metabolites

25

Unlimited elements (always ON)

1007 Reactions:

 

233

Gene transcription/translation

87

Translocation of elements between compartments

40

Protein complex synthesis/cofactor binding

18

Sulphur metabolism/glutathione biosynthesis

13

Haem/siroheme/FeS/PLP synthesis

67

ATP/GTP synthesis

36

Oxidative stress

419

Element degradation

5

NADP/NADPH synthesis

5

Allantoin (NH3)