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Table 4 The intersection of coexpressed genes to NANOG, SOX2, and POU5F1 when Spearman and regression are used

From: TF-Cluster: A pipeline for identifying functionally coordinated transcription factors via network decomposition of the shared coexpression connectivity matrix (SCCM)

Common Genes

Unique Genes

BC069807--NANOGP8

Regression/Pearson

BC090958--SALL2

 

BC099704--NANOGP8

BC093979--HESX1[117]

NM_001421--ELF4

NM_032805--ZNF206 (ZSCAN10)[23, 24]

NM_003106--SOX2

 

NM_003325--HIRA

Spearman

NM_004078--CSRP1

AF454056--PRKCBP1[60]

NM_004426--PHC1

BC010105--NASP

NM_004427--PHC2

BC098403--ETV1[28, 29]

NM_004497--FOXA3

CR627389--ETV1[28, 29]

NM_005375--MYB

NM_002653--PITX1

NM_005634--SOX3

NM_002701--POU5F1[25]

NM_006892--DNMT3B

NM_005224--ARID3A

NM_016089--ZNF589

NM_005239--ETS2[118]

NM_018645--HES6

NM_005407--SALL2[25]

NM_021728--OTX2

NM_006074--TRIM22[32]

NM_022051--EGLN1

NM_021958--HLX1

NM_024504--PRDM14

NM_021973--HAND2

NM_024865--NANOG

NM_024015--HOXB4[33]

NM_033204--ZNF101

 

NM_173547--TRIM65

 

XM_929986--LOC653441

 
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BMC Systems Biology

ISSN: 1752-0509

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