 
Random Control (%)

Linkage Interval (%)

Genomewide Scan(%)


 
R
^{2}

BF

R
^{2}

BF

R
^{2}

BF

Precision

SG

26.11 (0.66)

26.56 (0.85)

21.69

23.79

6.29

5.25


DK

26.25 (0.63)

28.67 (0.72)

19.60

31.20

7.13

5.53

Mean Rank Ratio

SG

17.31 (0.11)

11.99 (0.05)

18.24

11.19

16.49

11.17


DK

17.82 (0.13)

10.75 (0.09)

19.09

9.73

17.03

9.91

AUC

SG

83.51 (0.10)

88.80 (0.05)

82.81

89.94

83.60

88.85


DK

83.01 (0.12)

90.04 (0.11)

81.95

90.18

83.06

90.11

 The small network indicates the domaindomain interaction network that is composed of the PDB part of the DOMINE database. R^{2} denotes the ordinary nonBayesian linear regression approach (using Rsquare as scores for candidate domains). BF denotes the domainRBF approach (using Bayes factors as scores for candidate domains). SG denotes shortest path with Gaussian kernel. DK denotes diffusion kernel. Results for random controls are mean (standard deviation) of 10 validation runs.