Table 6 Selected inverse gene-(predicted)miRNA relations
Genes | Fold Change gene (E14.5) on microarray | Fold Change Gene (E17.5) on microarray | Target miRNA | Fold Change miRNA (E14.5) from qPCR | Fold Change miRNA (E17.5) from qPCR | Prediction Algorithms | Pathways |
|---|---|---|---|---|---|---|---|
Adam22 | -133 | Â | miR-30a-5p | 1.70 | 1.31 | TargetScan, miRanda | Cell-matrix interaction |
Calcr | 4.63 | 6.14 | miR-200a | 1.36 | -1.10 | TargetScan, miRanda and miRDB; TargetScan, miRanda | Neuroactive ligand-receptor interaction |
Calcr | 4.63 | 6.14 | miR-10a | 1.26 | -1.23 | TargetScan, miRanda and miRDB; TargetScan, miRanda | Neuroactive ligand-receptor interaction |
Cpeb3 | -19.88 | -6.47 | miR-30a-5p | 1.70 | 1.31 | TargetScan, miRanda | Â |
Cpeb3 | -19.88 | -6.47 | miR-200a | 1.36 | -1.10 | TargetScan, miRanda | Â |
Ddx3y | -13 | Â | miR-429 | 1.27 | -1.17 | TargetScan, miRanda and miRDB | RIG-I-like receptor signaling pathway |
Edil3 | -4.82 | -6.43 | miR-126-5p | 1.43 | -1.45 | TargetScan, miRanda and miRDB | Cell adhesion |
Edil3 | -4.82 | -6.43 | miR-182 | 1.62 | 1.48 | TargetScan, miRanda and miRDB | Cell adhesion |
F2rl2 | 35.26 | Â | miR-126-5p | 1.43 | -1.45 | TargetScan, miRDB | Â |
Fgf10 | 1.05 | 4.18 | miR-126-5p | 1.43 | -1.45 | TargetScan, miRanda and miRDB; miRDB and miRanda | MAPK signaling |
Fgfr3 | 4.12 | 10.16 | miR-488 | -2.03 | 2.11 | TargetScan, miRanda and miRDB | MAPK signaling |
Grap2 | 157 | Â | miR-10a | 1.26 | -1.23 | TargetScan, miRanda | T cell receptor signaling pathway |
Hdac9 | -1.54 | -22.29 | miR-30a-5p | 1.70 | 1.31 | TargetScan, miRanda; TargetScan, miRanda and miRDB | Notch signaling |
Hdac9 | -1.54 | -22.29 | miR-204 | -1.32 | -1.22 | TargetScan, miRanda; TargetScan, miRanda and miRDB | Notch signaling |
Hdac9 | -1.54 | -22.29 | miR-182 | 1.62 | 1.48 | TargetScan, miRanda; TargetScan, miRanda and miRDB | Notch signaling |
Ltbp1 | -368.46 | 36.38 | miR-10a | 1.26 | -1.23 | TargetScan, miRanda | TGF-Beta signaling |
Mysm1 | 2.85 | 3.24 | miR-126-5p | 1.43 | -1.45 | TargetScan, miRanda | Â |
P2rx7 | 4.65 | 11.66 | miR-204 | -1.32 | -1.22 | miRDB, miRanda | Calcium Signaling |
Pitx2 | 1.23 | 3.91 | miR-200a | 1.36 | -1.10 | TargetScan, miRanda and miRDB | TGF-Beta signaling |
Sox6 | -1.94 | -28.68 | miR-96 | 1.15 | 1.76 | TargetScan, miRanda and miRDB; TargetScan, miRanda | Negative regulation of transcription |
Sox6 | -1.94 | -28.68 | miR-182 | 1.62 | 1.48 | TargetScan, miRanda and miRDB; TargetScan, miRanda | Negative regulation of transcription |