Module description | Ranalexin Altered Gene Set | Additional Genes In Module | False discovery rate adjusted p-value |
---|---|---|---|
+ Val/Leu/Ile metabolism | SAR2141, SAR2143, SAR2144, SAR2146, SAR2147, SAR2148 (6/7* genes) | SAR2297 | <9.0E-5* |
+ Na+/H+ antiporters (mnh operons) | SAR0629-SAR0635, SAR0908 (8/17* genes) | SAR0909-SAR0915, SAR0627, SAR0628 | <9.0E-5* |
+ Persister formation, phosphate transport (pstSCAB-phoU operon) | SAR1400-SAR1402, SAR1398 (4/4 genes) | - | 1.2E-4 |
+ Chaperones, stress response | SAR0938, SAR1657, SAR1658 (3/3 genes) | - | 0.027 |
+ Osmoprotectant transport | SAR2536-SAR2538 (3/6 genes) | 3 genes: SAR2535, SAR0775, SAR0776 | 0.046 |
- Virulence factors (ESAT-6 system) | SAR0279, SAR0281-0284, SAR0287, SAR0288 (7/12* genes) | SAR0285, SAR0286, SAR0289, SAR0290, SAR0291 | <1.9E-4* |
- High-affinity metal ion transport (Fe) | SAR0787-SAR0790 (4/5 genes) | SAR1011 | 0.0019 |
- Virulence factors (Colonization, immuno-modulation) | SAR0567, SAR0847, SAR2508 SAR2709 (4/16 genes) | SA0566, SAR0842, SAR1102, SAR1103, SAR1223, SAR1489, SAR1802, SAR1841, SAR2383, SAR2421, SAR2580, SAR2734 | 0.0062 |
- High-affinity metal ion transport (Fe, Zn, Mn, Mo) | SAR0274, SAR0643, SAR2594, SAR2452 (4/9 genes) | SAR1633, SAR1928, SAR2361, SAR2543, SAR2544 | 0.0062 |
- Virulence (inferred from network) | SAR0292-SAR0294 (3/3 genes) | - | 0.025 |
- Cell division | SAR1177-SAR1179 (3/4 genes) | SAR1175 | 0.028 |