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Table 2 Comparison of BiologicalNetworks/HostPathogen database with public host-pathogen interaction resources

From: BiologicalNetworks - tools enabling the integration of multi-scale data for the host-pathogen studies

 

PHI-base

PHIDIAS

NCBI Influenza db

PIG

IVDB

Cytoscape

BiologicalNetworks/HostPathogenDB

Scalability*

no

no

no

no

no

no

yes

Data integration engine

no

no

no

no

no

no

yes

Interaction and Pathways data/analysis

yes

yes

no

yes

no

yes

yes

Chemicals/Drug Discovery

no

no

no

no

no

yes

yes

3D structure

no

no

no

no

no

no

yes

Sequence annotation/search

no/yes

yes/yes

yes/yes

no/yes

no/no

no/no

yes/yes

Phylogenetic analysis

no

no

yes

no

yes

no

yes

Regulatory regions analysis

no

no

no

no

no

no

yes

Orthology analysis

no

no

no

no

no

no

yes

Phylogeoraphy

no

no

no

no

no

no

yes

Microarray data/analysis

no/no

yes/no

yes/yes

yes/no

no/no

yes/yes

yes/yes

Web search/

Research environment

yes/no

yes/no

yes/no

yes/no

yes/no

no/yes

yes/yes

  1. *Scalability to the number of integrated data sources.