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Figure 1 | BMC Systems Biology

Figure 1

From: A transcriptional analysis of carotenoid, chlorophyll and plastidial isoprenoid biosynthesis genes during development and osmotic stress responses in Arabidopsis thaliana

Figure 1

Diagram of the plastidial isoprenoid biosynthesis pathway detailing the level of co-expression that PSY shares with individual interrelated isoprenoid biosynthesis pathway genes. The pathways represented include the Calvin Cycle, MEP, Carotenoid, Chlorophyll, Phylloqinone, Plastoquinone, ABA and Gibberellins and are collectively referred to as the PSY-correlated isoprenoid interrelated genes (PSY-CIIG). Reaction substrates and products are represented in bold black letters while genes that encode pathway enzymes are in black italic letters. Numbers in red parentheses represent expression correlation r-values and numbers in square brackets indicate the number of paralog genes that are annotated to encode the respective enzymes. All r-values > 0.5 had p-values and e-values <1.0-15. Non-significant r-values are indicated as n.s. Only the highest correlated member of the paralog gene family and those that have a co-expression value > 0.6 are listed. See Additional File 1 for list of corresponding gene IDs, details of statistics for individual genes and an extended list including additional paralog gene family members.

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