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Table 1 Comparison of properties of reconstructed metabolic network for selected pathogens

From: Exploring the metabolic network of the epidemic pathogen Burkholderia cenocepacia J2315 via genome-scale reconstruction

Model N.A.* AbyMBEL891 i NJ661 i RR1083 i MO1056 i KF1028
Genome size 2.8 Mb 3.93 Mb 4.4 Mb 4.8 Mb 6.3 Mb 8.1 Mb
Included genes 758 650 661 1,083 1,056 1,028
Total reactions 1,497 891 939 1,087 883 859
Gene-associated reactions (% of total reactions) 1,278 713 (80%) 723 (77%) 1,018 (93.7%) 839 (95%) 832 (96.9%)
Non-gene-associated reactions 219 46 216 69 44 27
Transport reactions 146 130 93 230 133 102
Metabolites 1,431 778 828 744 760 834
  1. Properties of metabolic reconstruction of B. cenocepacia J2315 (iKF1028) were compared with other published metabolic reconstructions of pathogenic microbes, S. aureus N315 (2009) [18] (which is the improvement of the N315 reconstruction by Becker and Palsson 2005 [19], and Heinermann et al. 2005 [20]), A. baumannii AYE (AbyMBEL891) (2010) [21], M. tuberculosis H37Rv (iNJ661) (2007) [22], S. typhimurium LT2 (iRR1083) (2009) [23], and P. aeruginosa PAO1 (iMO1056) (2008) [24]. *: Not available for the reconstruction of S. aureus N315.