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Table 3 Comparison with the BIOLOG substrates utilization assays

From: Exploring the metabolic network of the epidemic pathogen Burkholderia cenocepacia J2315 via genome-scale reconstruction

Class Carbon source BIOLOG results In silico prediction Agreement
Carbohydrates N-Acetyl-D-glucosamine No Growth No Growth yes
  D-Galactose Growth Growth yes
  α-D-Glucose Growth Growth yes
  m-Inositol No Growth No Growth yes
  Sucrose Growth Growth yes
  D-Trehalose Growth Growth yes
Carboxylic acids Acetic acid Growth Growth yes
  cis-Aconitic acid Growth Growth yes
  Citric acid Growth Growth yes
  D-Gluconic acid Growth Growth yes
  β-Hydroxybutyric acid Growth Growth yes
  α-Ketoglutaric acid Growth Growth yes
  D,L-Lactic acid Growth Growth yes
  Malonic acid Growth Growth yes
  Propionic acid No Growth No Growth yes
  Quinic acid Growth Growth yes
  D-Saccharic acid Growth Growth yes
  Succinic acid Growth Growth yes
Amino acids L-Alanine Growth Growth yes
  L-Asparagine Growth Growth yes
  L-Aspartic acid No Growth Growth no
  L-Glutamic acid Growth Growth yes
  L-Histidine Growth Growth yes
  Hydroxy-L-proline Growth Growth yes
  L-Leucine No Growth Growth no
  L-Ornithine No Growth Growth no
  L-Phenylalanine Growth Growth yes
  L-Proline Growth Growth yes
  L-Pyroglutamic Acid Growth Growth yes
  L-Serine Growth Growth yes
  L-Threonine No Growth Growth no
  D,L-Carnitine No Growth No Growth yes
  γ-Aminobutyric acid Growth Growth yes
Miscellaneous Succinamic acid Growth Growth yes
  Uridine No Growth No Growth yes
  Thymidine No Growth No Growth yes
  Putrescine No Growth No Growth yes
  2,3-Butanediol No Growth No Growth yes
  Glycerol No Growth Growth no
  D-Glucose-6-Phosphate Growth Growth yes