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Table 1 Description and range of the parameters varied in the simulations with the mammalian circadian clock model

From: Hierarchical Cluster-based Partial Least Squares Regression (HC-PLSR) is an efficient tool for metamodelling of nonlinear dynamic models

Parameter name

Unit

Description

Minimum value

Level step size

Maximum value

vmB

nMh-1

Maximum rate of Bmal1 mRNA degradation

0.16

0.017

0.28

vmC

nMh-1

Maximum rate of Cry mRNA degradation

0.80

0.086

1.40

vmP

nMh-1

Maximum rate of Per mRNA degradation

0.88

0.094

1.54

vdPCN

nMh-1

Maximum rate of degradation of nuclear phosphorylated Per-Cry complex

0.80

0.086

1.40

vdIN

nMh-1

Maximum rate of degradation of nuclear Per-Cry-Clock-Bmal1 complex

0.64

0.069

1.12

k1

h-1

Rate constant for entry of the Per-Cry complex into the nucleus

0.64

0.069

1.12

k3

nM-1h-1

Rate constant for the formation of the Per-Cry complex

0.64

0.069

1.12

k5

h-1

Rate constant for entry of the Bmal1 protein into the nucleus

0.32

0.034

0.56

k7

nM-1h-1

Rate constant for the formation of the inactive Per-Cry-Clock-Bmal1 complex

0.40

0.043

0.70