TY - BOOK AU - Goldbeter, A. PY - 1997 DA - 1997// TI - Biochemical Oscillations and Cellular Rhythms: The Molecular Bases of Periodic and Chaotic Behaviour PB - Cambridge University Press CY - USA ID - Goldbeter1997 ER - TY - BOOK AU - Bracewell, R. N. PY - 1978 DA - 1978// TI - The Fourier transform and its applications PB - McGraw-Hill CY - New York ID - Bracewell1978 ER - TY - BOOK AU - Jaynes, E. T. AU - Bretthorst, G. L. PY - 2003 DA - 2003// TI - Probability theory: the logic of science PB - Cambridge University Press CY - Cambridge, UK UR - https://doi.org/10.1017/CBO9780511790423 DO - 10.1017/CBO9780511790423 ID - Jaynes2003 ER - TY - CHAP AU - Gibbs, J. W. PY - 1899 DA - 1899// TI - Fourier's Series BT - Nature ID - Gibbs1899 ER - TY - BOOK AU - Kammler, D. W. PY - 2007 DA - 2007// TI - A First Course in Fourier Analysis PB - Cambridge University Press CY - Cambridge ID - Kammler2007 ER - TY - BOOK AU - Mallat, S. G. PY - 1999 DA - 1999// TI - A wavelet tour of signal processing PB - Academic Press CY - San Diego ID - Mallat1999 ER - TY - BOOK AU - Heil, C. AU - Walnut, D. F. PY - 2006 DA - 2006// TI - Fundamental papers in wavelet theory PB - Princeton University Press CY - Princeton, N.J. ID - Heil2006 ER - TY - BOOK AU - Daubechies, I. PY - 1992 DA - 1992// TI - Ten lectures on wavelets PB - Society for Industrial and Applied Mathematics CY - Philadelphia, Pa. UR - https://doi.org/10.1137/1.9781611970104 DO - 10.1137/1.9781611970104 ID - Daubechies1992 ER - TY - BOOK AU - Prasad, L. AU - Iyengar, S. S. PY - 1997 DA - 1997// TI - Wavelet analysis with applications to image processing PB - CRC Press CY - Boca Raton ID - Prasad1997 ER - TY - BOOK AU - Petrosian, A. A. AU - Meyer, F. G. PY - 2001 DA - 2001// TI - Wavelets in signal and image analysis: from theory to practice PB - Kluwer Academic CY - Dordrecht ID - Petrosian2001 ER - TY - JOUR AU - Davis, R. A. AU - Charlton, A. J. AU - Godward, J. AU - Jones, S. A. AU - Harrison, M. AU - Wilson, J. C. PY - 2007 DA - 2007// TI - Adaptive binning: An improved binning method for metabolomics data using the undecimated wavelet transform JO - Chemometrics and Intelligent Laboratory Systems VL - 85 UR - https://doi.org/10.1016/j.chemolab.2006.08.014 DO - 10.1016/j.chemolab.2006.08.014 ID - Davis2007 ER - TY - JOUR AU - Ricke, J. AU - Maass, P. AU - Lopez Hänninen, E. AU - Liebig, T. AU - Amthauer, H. AU - Stroszczynski, C. AU - Schauer, W. AU - Boskamp, T. AU - Wolf, M. PY - 1998 DA - 1998// TI - Wavelet versus JPEG (Joint Photographic Expert Group) and fractal compression. Impact on the detection of low-contrast details in computed radiographs JO - Invest Radiol VL - 33 UR - https://doi.org/10.1097/00004424-199808000-00006 DO - 10.1097/00004424-199808000-00006 ID - Ricke1998 ER - TY - JOUR AU - Lucier, B. J. AU - Kallergi, M. AU - Qian, W. AU - DeVore, R. A. AU - Clark, R. A. AU - Saff, E. B. AU - Clarke, L. P. PY - 1994 DA - 1994// TI - Wavelet compression and segmentation of digital mammograms JO - J Digit Imaging VL - 7 UR - https://doi.org/10.1007/BF03168476 DO - 10.1007/BF03168476 ID - Lucier1994 ER - TY - BOOK AU - Sivia, D. S. AU - Skilling, J. PY - 2006 DA - 2006// TI - Data analysis: a Bayesian tutorial PB - Oxford University Press CY - Oxford ID - Sivia2006 ER - TY - BOOK AU - Bretthorst, G. L. PY - 1988 DA - 1988// TI - Bayesian spectrum analysis and parameter estimation PB - Springer-Verlag CY - Lecture notes in statistics, New York UR - https://doi.org/10.1007/978-1-4684-9399-3 DO - 10.1007/978-1-4684-9399-3 ID - Bretthorst1988 ER - TY - JOUR AU - Bretthorst, G. L. AU - Kotyk, J. J. AU - Ackerman, J. J. PY - 1989 DA - 1989// TI - 31P NMR Bayesian spectral analysis of rat brain in vivo JO - Magn Reson Med VL - 9 UR - https://doi.org/10.1002/mrm.1910090214 DO - 10.1002/mrm.1910090214 ID - Bretthorst1989 ER - TY - JOUR AU - Neil, J. J. AU - Bretthorst, G. L. PY - 1993 DA - 1993// TI - On the use of Bayesian probability theory for analysis of exponential decay data: an example taken from intravoxel incoherent motion experiments JO - Magn Reson Med VL - 29 UR - https://doi.org/10.1002/mrm.1910290510 DO - 10.1002/mrm.1910290510 ID - Neil1993 ER - TY - JOUR AU - Bois, F. Y. PY - 2009 DA - 2009// TI - GNU MCSim: Bayesian statistical inference for SBML-coded systems biology models JO - Bioinformatics VL - 25 UR - https://doi.org/10.1093/bioinformatics/btp162 DO - 10.1093/bioinformatics/btp162 ID - Bois2009 ER - TY - JOUR AU - Kim, S. AU - Imoto, S. AU - Miyano, S. PY - 2004 DA - 2004// TI - Dynamic Bayesian network and nonparametric regression for nonlinear modeling of gene networks from time series gene expression data JO - Biosystems VL - 75 UR - https://doi.org/10.1016/j.biosystems.2004.03.004 DO - 10.1016/j.biosystems.2004.03.004 ID - Kim2004 ER - TY - JOUR AU - Klinke, D. J. n. PY - 2009 DA - 2009// TI - An empirical Bayesian approach for model-based inference of cellular signaling networks JO - BMC Bioinformatics VL - 10 UR - https://doi.org/10.1186/1471-2105-10-371 DO - 10.1186/1471-2105-10-371 ID - Klinke2009 ER - TY - JOUR AU - Morrissey, E. R. AU - Juarez, M. A. AU - Denby, K. J. AU - Burroughs, N. J. PY - 2010 DA - 2010// TI - On reverse engineering of gene interaction networks using time course data with repeated measurements JO - Bioinformatics VL - 26 UR - https://doi.org/10.1093/bioinformatics/btq421 DO - 10.1093/bioinformatics/btq421 ID - Morrissey2010 ER - TY - JOUR AU - Mukherjee, S. AU - Speed, T. P. PY - 2008 DA - 2008// TI - Network inference using informative priors JO - Proc Natl Acad Sci USA VL - 105 UR - https://doi.org/10.1073/pnas.0802272105 DO - 10.1073/pnas.0802272105 ID - Mukherjee2008 ER - TY - JOUR AU - Savage, R. S. AU - Ghahramani, Z. AU - Griffin, J. E. AU - de la Cruz, B. J. AU - Wild, D. L. PY - 2010 DA - 2010// TI - Discovering transcriptional modules by Bayesian data integration JO - Bioinformatics VL - 26 UR - https://doi.org/10.1093/bioinformatics/btq210 DO - 10.1093/bioinformatics/btq210 ID - Savage2010 ER - TY - JOUR AU - Schaber, J. AU - Liebermeister, W. AU - Klipp, E. PY - 2009 DA - 2009// TI - Nested uncertainties in biochemical models JO - IET Syst Biol VL - 3 UR - https://doi.org/10.1049/iet-syb:20070042 DO - 10.1049/iet-syb:20070042 ID - Schaber2009 ER - TY - JOUR AU - Secrier, M. AU - Toni, T. AU - Stumpf, M. P. H. PY - 2009 DA - 2009// TI - The ABC of reverse engineering biological signalling systems JO - Mol Biosyst VL - 5 UR - https://doi.org/10.1039/b908951a DO - 10.1039/b908951a ID - Secrier2009 ER - TY - JOUR AU - Vyshemirsky, V. AU - Girolami, M. A. PY - 2008 DA - 2008// TI - Bayesian ranking of biochemical system models JO - Bioinformatics VL - 24 UR - https://doi.org/10.1093/bioinformatics/btm607 DO - 10.1093/bioinformatics/btm607 ID - Vyshemirsky2008 ER - TY - JOUR AU - Vyshemirsky, V. AU - Girolami, M. PY - 2008 DA - 2008// TI - BioBayes: a software package for Bayesian inference in systems biology JO - Bioinformatics VL - 24 UR - https://doi.org/10.1093/bioinformatics/btn338 DO - 10.1093/bioinformatics/btn338 ID - Vyshemirsky2008 ER - TY - JOUR AU - Wilkinson, D. J. PY - 2007 DA - 2007// TI - Bayesian methods in bioinformatics and computational systems biology JO - Brief Bioinform VL - 8 UR - https://doi.org/10.1093/bib/bbm007 DO - 10.1093/bib/bbm007 ID - Wilkinson2007 ER - TY - JOUR AU - Yoshida, R. AU - Nagasaki, M. AU - Yamaguchi, R. AU - Imoto, S. AU - Miyano, S. AU - Higuchi, T. PY - 2008 DA - 2008// TI - Bayesian learning of biological pathways on genomic data assimilation JO - Bioinformatics VL - 24 UR - https://doi.org/10.1093/bioinformatics/btn483 DO - 10.1093/bioinformatics/btn483 ID - Yoshida2008 ER - TY - JOUR AU - Yoshida, R. AU - Saito, M. M. AU - Nagao, H. AU - Higuchi, T. PY - 2010 DA - 2010// TI - Bayesian experts in exploring reaction kinetics of transcription circuits JO - Bioinformatics VL - 26 UR - https://doi.org/10.1093/bioinformatics/btq389 DO - 10.1093/bioinformatics/btq389 ID - Yoshida2010 ER - TY - JOUR AU - Meier, J. E. AU - Marshall, A. G. PY - 1990 DA - 1990// TI - Bayesian versus Fourier spectral analysis of ion cyclotron resonance time-domain signals JO - Anal Chem VL - 62 UR - https://doi.org/10.1021/ac00201a021 DO - 10.1021/ac00201a021 ID - Meier1990 ER - TY - JOUR AU - Chylla, R. A. AU - Markley, J. L. PY - 1993 DA - 1993// TI - Improved frequency resolution in multidimensional constant-time experiments by multidimensional Bayesian analysis JO - J Biomol NMR VL - 3 ID - Chylla1993 ER - TY - BOOK AU - MacKay, D. J. C. PY - 2003 DA - 2003// TI - Information theory, inference, and learning algorithms PB - Cambridge University Press CY - Cambridge, UK ID - MacKay2003 ER - TY - JOUR AU - Toni, T. AU - Stumpf, M. P. H. PY - 2010 DA - 2010// TI - Simulation-based model selection for dynamical systems in systems and population biology JO - Bioinformatics VL - 26 UR - https://doi.org/10.1093/bioinformatics/btp619 DO - 10.1093/bioinformatics/btp619 ID - Toni2010 ER - TY - JOUR AU - Skilling, J. PY - 2006 DA - 2006// TI - Nested Sampling for General Bayesian Computation JO - Bayesian Analysis VL - 1 UR - https://doi.org/10.1214/06-BA127 DO - 10.1214/06-BA127 ID - Skilling2006 ER - TY - JOUR AU - Cooley, J. AU - Tukey, J. PY - 1965 DA - 1965// TI - An Algorithm for Machine Calculation of Complex Fourier Series JO - Mathematics of Computation VL - 19 UR - https://doi.org/10.1090/S0025-5718-1965-0178586-1 DO - 10.1090/S0025-5718-1965-0178586-1 ID - Cooley1965 ER - TY - JOUR AU - Torrence, C. AU - Compo, G. PY - 1998 DA - 1998// TI - A Practical Guide to Wavelet Analysis JO - Bulletin of the American Meteorological Society VL - 79 UR - https://doi.org/2.0.CO;2 DO - 2.0.CO;2 ID - Torrence1998 ER - TY - JOUR AU - Kummer, U. AU - Olsen, L. F. AU - Dixon, C. J. AU - Green, A. K. AU - Bornberg-Bauer, E. AU - Baier, G. PY - 2000 DA - 2000// TI - Switching from simple to complex oscillations in calcium signaling JO - Biophys J VL - 79 UR - https://doi.org/10.1016/S0006-3495(00)76373-9 DO - 10.1016/S0006-3495(00)76373-9 ID - Kummer2000 ER - TY - JOUR AU - Oldroyd, G. E. D. AU - Downie, J. A. PY - 2008 DA - 2008// TI - Coordinating nodule morphogenesis with rhizobial infection in legumes JO - Annu Rev Plant Biol VL - 59 UR - https://doi.org/10.1146/annurev.arplant.59.032607.092839 DO - 10.1146/annurev.arplant.59.032607.092839 ID - Oldroyd2008 ER - TY - JOUR AU - Hazledine, S. AU - Sun, J. AU - Wysham, D. AU - Downie, J. A. AU - Oldroyd, G. E. D. AU - Morris, R. J. PY - 2009 DA - 2009// TI - Nonlinear time series analysis of nodulation factor induced calcium oscillations: evidence for deterministic chaos? JO - PLoS One VL - 4 UR - https://doi.org/10.1371/journal.pone.0006637 DO - 10.1371/journal.pone.0006637 ID - Hazledine2009 ER - TY - JOUR AU - Kosuta, S. AU - Hazledine, S. AU - Sun, J. AU - Miwa, H. AU - Morris, R. J. AU - Downie, J. A. AU - Oldroyd, G. E. D. PY - 2008 DA - 2008// TI - Differential and chaotic calcium signatures in the symbiosis signaling pathway of legumes JO - Proc Natl Acad Sci USA VL - 105 UR - https://doi.org/10.1073/pnas.0803499105 DO - 10.1073/pnas.0803499105 ID - Kosuta2008 ER - TY - CHAP AU - Ghil, M. AU - Allen, M. R. AU - Dettinger, M. D. AU - Ide, K. AU - Kondrashov, D. AU - Mann, M. E. AU - Robertson, A. W. AU - Saunders, A. AU - Tian, Y. AU - Varadi, F. AU - Yiou, P. PY - 2002 DA - 2002// TI - Advanced spectral methods for climatic time series BT - Rev Geophys ID - Ghil2002 ER - TY - JOUR AU - Pruneda-Paz, J. L. AU - Kay, S. A. PY - 2010 DA - 2010// TI - An expanding universe of circadian networks in higher plants JO - Trends Plant Sci VL - 15 UR - https://doi.org/10.1016/j.tplants.2010.03.003 DO - 10.1016/j.tplants.2010.03.003 ID - Pruneda-Paz2010 ER - TY - JOUR AU - Gardner, M. J. AU - Hubbard, K. E. AU - Hotta, C. T. AU - Dodd, A. N. AU - Webb, A. A. R. PY - 2006 DA - 2006// TI - How plants tell the time JO - Biochem J VL - 397 UR - https://doi.org/10.1042/BJ20060484 DO - 10.1042/BJ20060484 ID - Gardner2006 ER - TY - JOUR AU - Edwards, K. D. AU - Anderson, P. E. AU - Hall, A. AU - Salathia, N. S. AU - Locke, J. C. W. AU - Lynn, J. R. AU - Straume, M. AU - Smith, J. Q. AU - Millar, A. J. PY - 2006 DA - 2006// TI - FLOWERING LOCUS C mediates natural variation in the high-temperature response of the Arabidopsis circadian clock JO - Plant Cell VL - 18 UR - https://doi.org/10.1105/tpc.105.038315 DO - 10.1105/tpc.105.038315 ID - Edwards2006 ER - TY - BOOK AU - Eaton, J. W. PY - 2002 DA - 2002// TI - GNU Octave Manual ID - Eaton2002 ER - TY - BOOK AU - Brockwell, P. J. AU - Davis, R. A. PY - 2002 DA - 2002// TI - Introduction to time series and forecasting PB - Springer CY - New York UR - https://doi.org/10.1007/b97391 DO - 10.1007/b97391 ID - Brockwell2002 ER - TY - BOOK AU - Press, W. H. PY - 2002 DA - 2002// TI - Numerical recipes in C++: the art of scientific computing PB - Cambridge University Press CY - Cambridge, UK ID - Press2002 ER -