Conditional random field approach to prediction of protein-protein interactions using domain information

BMC Systems Biology

Table 3 The AUC results for training and test datasets of C. elegans by the CRF method with MI, that without MI, the EM method, and the association method

iteration	CRF with MI		CRF without MI		EM		Assoc
	training	test	training	test	training	test	training	test
1st	0.999975	0.657143	0.999975	0.514286	1.000000	0.542857	1.000000	0.542857
2nd	0.997899	0.923077	0.996873	0.948718	0.999875	0.743590	0.999825	0.743590
3rd	0.998775	0.900000	0.998825	0.933333	0.999875	0.866667	0.999825	0.866667
4th	0.998950	0.966667	0.999850	0.966667	0.999850	0.633333	0.999850	0.633333
5th	0.998900	1.000000	0.998875	1.000000	0.999675	1.000000	0.999700	1.000000
average	0.998900	0.889377	0.998879	0.872601	0.999855	0.757289	0.999840	0.757289

ISSN: 1752-0509