Table 2 KARE result: top 5 gene sets with smallest q-value associated with hypertension phenotype from SNP-PRAGE
From: SNP-PRAGE: SNP-based parametric robust analysis of gene set enrichment
Gene set | No. genes | No. SNPs | p-value | q-value |
|---|---|---|---|---|
ST_JNK_MAPK_PATHWAY | 36 | 1701 | 2.40 × 10-5 | 9.48× 10-3 |
ST_ERK1_ERK2_MAPK_PATHWAY | 24 | 1765 | 1.61 × 10-4 | 3.16 × 10-2 |
HSA05214_GLIOMA | 52 | 2301 | 3.92 × 10-4 | 5.16 × 10-2 |
HSA05050_DENTATORUBROPALLIDOLUYSIAN_ATROPHY | 14 | 997 | 7.97 × 10-4 | 7.57 × 10-2 |
EXTRINSICPATHWAY | 13 | 579 | 9.58 × 10-4 | 7.57 × 10-2 |