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Figure 4 | BMC Systems Biology

Figure 4

From: Pinpointing transcription factor binding sites from ChIP-seq data with SeqSite

Figure 4

Binding site identification results by SeqSite on the GABP, STAT1 and NRSF ChIP-seq data. (A-C) The histograms of the number of detected binding regions with 1, 2, 3, 4 and >4 binding sites for the three datasets, respectively. (D,E) Two examples of the detected multiple binding sites from the GABP data. Both binding regions are in the promoter regions of genes ITGB2 (also known as CD18) (D) and TOMM22 (E). The tracks from top to bottom are: the forward tag profile, the reverse tag profile, the detected binding sites by SeqSite, binding motifs, and gene annotation.

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