Figure 5
From: Pinpointing transcription factor binding sites from ChIP-seq data with SeqSite
Positive detection rate (PDR) of binding sites with the six methods. The positive detection rate is defined as the fraction of SBRs covering associated binding motifs. SBRs are 200-bp standardized regions centered at each binding site detected. The three datasets are the GABP (A), STAT1 (B), and NRSF (C) ChIP-seq datasets. The experimented methods are: SeqSite (purple curve), MACS (orange), SISSRs (brown), QuEST (green), GPS (magenta), and PICS (grey).