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Table 1 Summary of the SeqSite results on the three ChIP-seq datasets at FDR 10%.

From: Pinpointing transcription factor binding sites from ChIP-seq data with SeqSite

TF

L

# BRs

# BSs

# BRs with multi-BS (%)

GABP

114.6

12,875

28,846

9,786 (76.0)

STAT1

194.6

39,222

82,104

23,914 (61.0)

NRSF

107.0

3,786

6,047

1,948 (51.5)

  1. L: average DNA fragment size (bp) estimated; BR: binding region; BS: binding site.