Table 2 Functional categories of 1,480 significant genes defined by the MapMan tool
Functional category | Number of genes | Group | |||
|---|---|---|---|---|---|
A | B | C | D | ||
Photosynthesis | 33 | 9 | 8 | 12 | 4 |
Major carbohydrate metabolism | 24 | 6 | 15 | 3 | 0 |
Minor carbohydrate metabolism | 17 | 6 | 3 | 4 | 4 |
Glycolysis | 10 | 0 | 9 | 1 | 0 |
Fermentation | 2 | 0 | 2 | 0 | 0 |
Gluconeogenesis/glyoxylate cycle | 3 | 1 | 0 | 0 | 2 |
Oxidative pentose phosphate pathway | 4 | 0 | 3 | 0 | 1 |
TCA / organism Transformation | 11 | 3 | 4 | 3 | 1 |
Mitochondrial electron transport /ATP synthesis | 7 | 3 | 2 | 0 | 2 |
Cell wall | 19 | 6 | 6 | 2 | 5 |
Lipid metabolism | 41 | 13 | 12 | 9 | 7 |
N-metabolism | 2 | 1 | 0 | 0 | 1 |
Amino acid metabolism | 38 | 14 | 13 | 5 | 6 |
S-assimilation | 2 | 2 | 0 | 0 | 0 |
Metal handling | 7 | 3 | 3 | 1 | 0 |
Secondary metabolism | 32 | 21 | 5 | 5 | 1 |
Hormone metabolism | 36 | 11 | 13 | 8 | 4 |
Co-factor and vitamin metabolism | 8 | 2 | 4 | 0 | 2 |
Tetrapyrrole synthesis | 6 | 3 | 2 | 1 | 0 |
Stress | 61 | 11 | 24 | 16 | 10 |
Redox regulation | 26 | 9 | 11 | 3 | 3 |
Polyamine metabolism | 6 | 4 | 1 | 1 | 0 |
Nucleotide metabolism | 16 | 3 | 9 | 2 | 2 |
Biodegradation of xenobiotics | 4 | 1 | 0 | 1 | 2 |
C1-metabolism | 6 | 1 | 4 | 0 | 1 |
Miscellaneous | 73 | 20 | 30 | 14 | 9 |
RNA | 177 | 55 | 57 | 37 | 28 |
DNA | 29 | 5 | 17 | 5 | 2 |
Protein | 157 | 41 | 64 | 17 | 35 |
Signalling | 74 | 25 | 24 | 12 | 13 |
Cell | 53 | 9 | 26 | 5 | 13 |
Development | 37 | 9 | 12 | 10 | 6 |
Transport | 81 | 40 | 19 | 15 | 7 |
Not assigned | 471 | 159 | 148 | 67 | 97 |