From: DREM 2.0: Improved reconstruction of dynamic regulatory networks from time-series expression data
Species | #TFs | #genes | Protein-DNA interactions | Type | Reference |
---|---|---|---|---|---|
S. cerevisiae | 205 | 6,230 | 22,167 | ChIP-Chip, conservation | |
E.coli | 124 | 1,763 | 3,520 | curated + computational | [26] |
D. melanogaster | 77 | 12,504 | 158,558 | ChIP-Chip,ChIP-Seq | [8] |
M. musculus | 336 | 16,641 | 468,319 | computational prediction,supplement | [36] |
H. sapiens | 127 | 19,755 | 954,377 | ChIP-Seq | [37] |
H. sapiens | 349 | 17,848 | 514,925 | computational prediction | [36] |
A. thaliana | 68 | 8,132 | 11,354 | diverse experimental evidence | [38] |