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Table 1 Ranges considered for six classes of model parameters

From: Specification, annotation, visualization and simulation of a large rule-based model for ERBB receptor signaling

Parameter class

Estimated range

Units

Rate constant for a bimolecular association reaction

10-7 – 10-5

(molecules/cell)-1·s-1

Rate constant for a unimolecular dissociation reaction

10-2 – 100

s-1

Rate constant for a phosphatase-catalyzed reaction*

10-3 – 10-1

s-1

Rate constant for a receptor trafficking step (internalization or recycling)*

10-3 – 10-1

s-1

Rate constant for endocytic degradation*

10-3 – 10-1

s-1

Protein copy number

104 – 106

molecules/cell

  1. Processes characterized by parameter classes marked by asterisks are taken to be first-order processes.