From: Computational codon optimization of synthetic gene for protein expression
 | E. coli | L. lactis | P. pastoris | S. cerevisiae | ||||
---|---|---|---|---|---|---|---|---|
Null hypothesis (H0) | DH = U | DH = DA | DH = U | DH = DA | DH = U | DH = DA | DH = U | DH = DA |
Alternative hypothesis (H1) | DH ≠U | DH ≠DA | DH ≠U | DH ≠DA | DH ≠U | DH ≠DA | DH ≠U | DH ≠DA |
No. of biased amino acids (P-value < 0.05) | 18 | 17 | 19 | 17 | 18 | 19 | 18 | 19 |
No. of unbiased amino acids (P-value ≥ 0.05) | 1 | 2 | 0 | 2 | 1 | 0 | 1 | 0 |
No. of singular amino acids | 2 | 2 | 2 | 2 | 2 | 2 | 2 | 2 |
No. of unevaluated amino acids (Expect count < 5) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Total no. of amino acids | 21 | 21 | 21 | 21 | 21 | 21 | 21 | 21 |
No. of biased amino acid pairs (P-value < 0.05) | 314 | 99 | 327 | 15 | 354 | 259 | 372 | 282 |
No. of unbiased amino acid pairs (P-value ≥ 0.05) | 26 | 23 | 12 | 65 | 38 | 36 | 19 | 9 |
No. of singular amino acid pairs | 4 | 4 | 4 | 4 | 4 | 4 | 4 | 4 |
No. of unevaluated amino acid pairs (Expect count < 5) | 76 | 294 | 77 | 336 | 24 | 121 | 25 | 125 |
Total no. of amino acid pairs | 420 | 420 | 420 | 420 | 420 | 420 | 420 | 420 |