Table 1 Pathway databases used to extract gene lists
Database | Version/date | Pathways | Inflammation | Genes | Format |
|---|---|---|---|---|---|
GeneGO | 01.2010 | 700+ | 59 | 804 | Excel Table |
PANTHER | v6.1 | 165 | 15 | 1,025 | SBML |
NetPATH | 01.2010 | 20 | 13 | 625 | BioPAX/SIF |
Reactome | v35 | 1081 | 4 | 173 | BioPAX/SIF |
NCI-PID | 01.2010 | 104 | 28 | 459 | BioPAX/SIF |
KEGG | 01.2010 | 1000+ | 9 | 564 | GPML |
Macrophage | 2010 | 1 | 1 | 195 | Excel Table |
SUMMARY | 128 | 2,361 | Excel Table |