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Table 1 Pathway databases used to extract gene lists

From: Creating and analyzing pathway and protein interaction compendia for modelling signal transduction networks

Database Version/date Pathways Inflammation Genes Format
GeneGO 01.2010 700+ 59 804 Excel Table
PANTHER v6.1 165 15 1,025 SBML
NetPATH 01.2010 20 13 625 BioPAX/SIF
Reactome v35 1081 4 173 BioPAX/SIF
NCI-PID 01.2010 104 28 459 BioPAX/SIF
KEGG 01.2010 1000+ 9 564 GPML
Macrophage 2010 1 1 195 Excel Table
SUMMARY    128 2,361 Excel Table