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Table 2 Pathway & interactome databases used to identify edges between genes

From: Creating and analyzing pathway and protein interaction compendia for modelling signal transduction networks

Database Version/date Type Edges Graph type
i2D 1.7.1 PPIN 11,327 Undirected
STRING 8.2.1 Text mining 35,033 Mixture
GeneGo 01.2010 Curated 11,994 Mixture
Cell Map 01.2010 Curated 12,933 Mixture
NCI-PID 01.2010 Curated 14,58 Mixture
Reactome v35 Curated 6,930 Mixture
Macrophage curated 2010 Curated 504 Mixture
SUMMARY    64,276 Mixture
  1. PPIN - protein-protein interaction network derived largely from high-throughput experiments; Mixture – both directed & signed, and undirected edges.