Table 1 False positive model predictions that indicate model errors
Gene | Error |
|---|---|
carA (b0032) | alternate pathway (CBMKr) gene functions not confirmed |
carB (b0033) | alternate pathway (CBMKr) gene functions not confirmed |
proB (b0242) | alternate pathway (NACODA) gene function not confirmed |
proA (b0243) | alternate pathway (NACODA) gene function not confirmed |
folD (b0529) | 5fthf[c] and methf[c] may be essential |
entD (b0583) | enter[c] may be essential |
pyrD (b0945) | alternate pathway (DHORDfum) is an orphan reaction |
pdxH (b1638) | pydx5p[c] may be essential |
pgsA (b1912) | pgp120[p] - pgp181[p] may be essential |
nrdA (b2234) | alternate pathway (RNDR1b – RNDR4b) gene functions not confirmed |
nrdB (b2235) | alternate pathway (RNDR1b – RNDR4b) gene functions not confirmed |
ptsI (b2416) | alternate pathway (GLCt2pp) glucose transport not confirmed |
waaK (b3623) | colipa[e] may be essential |
wzyE (b3793) | eca4colipa[e] may be essential |
ubiE (b3833) | reactions AMMQLT8 and OMBZLM are blocked by gaps |
ubiB (b3835) | alternate pathway (OPXHH3) is an orphan reaction |
ppa (b4226) | isozymes, ppx (b2502) and surE (b2744), may be incorrect |