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Table 8 False negative model predictions caused by missing isozymes or alternate pathways

From: Gap-filling analysis of the iJO1366 Escherichia coli metabolic network reconstruction for discovery of metabolic functions

Gene

Putative Isozyme

E-value

purK (b0522)

purT (b1849)

2.00E-12

gltA (b0720)

prpC (b0333)

1.00E-41

aspC (b0928)

tyrB (b4054)

4.00E-94

fabH (b1091)

none identified

 

pabC (b1096)

ilvE (b3770)

7.00E-8

icd (b1136)

dmlA (b1800)

3.00E-19

aldA (b1415)

gabD (b2661)

1.00E-90

 

prr (b1444)

3.00E-80

 

feaB (b1385)

1.00E-69

 

aldB (b3588)

2.00E-66

 

betB (b0312)

4.00E-65

ubiX (b2311)

none identified

 

luxS (b2687)

none identified

 

thyA (b2827)

none identified

 

zupT (b3040)

none identified

 

folB (b3058)

folX (b2303)

1.00E-4

argG (b3172)

none identified

 

folP (b3177)

none identified

 

yrbG (b3196)

none identified

 

kdsC (b3198)

none identified

 

argD (b3359)

astC (b1748)

1.00E-146

 

gabT (b2662)

3.00E-64

 

puuE (b1302)

3.00E-54

 

patA (b3073)

4.00E-52

 

hemL (b0154)

3.00E-32

cysG (b3368)

none identified

 

ilvE (b3770)

pabC (b1096)

8.00E-8

dapF (b3809)

none identified

 

argC (b3958)

none identified

 

argB (b3959)

none identified

 

hemE (b3997)

none identified

 

ubiC (b4039)

none identified

 

purA (b4177)

none identified

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