TY - JOUR AU - Ash, C. PY - 2010 DA - 2010// TI - From simplicity to complexity JO - Science VL - 329 ID - Ash2010 ER - TY - BOOK AU - Bellman, R. PY - 1961 DA - 1961// TI - Adaptive Control Processes: A Guided Tour. Princeton PB - Princeton University Press CY - NJ ID - Bellman1961 ER - TY - CHAP AU - Chen, W. AU - Schmidt, M. AU - Tian, W. AU - Samatova, N. PY - 2009 DA - 2009// TI - A fast, accurate algorithm for identifying functional modules through pairwise local alignment of protein interaction networks BT - Proceedings of the International Conference on Bioinformatics & Computational Biology PB - Las Vegas CY - NV, USA ID - Chen2009 ER - TY - STD TI - Chen W, Rocha A, Hendrix W, Schmidt M, Samatova N: The multiple alignment algorithm for metabolic pathways without abstraction.Proceedings of IEEE International Conference on Data Mining Workshops 669-678. ID - ref4 ER - TY - JOUR AU - Koyutürk, M. AU - Kim, Y. AU - Subramaniam, S. AU - Szpankowski, W. AU - Grama, A. PY - 2006 DA - 2006// TI - Detecting conserved interaction patterns in biological networks JO - J Comput Biol VL - 13 UR - https://doi.org/10.1089/cmb.2006.13.1299 DO - 10.1089/cmb.2006.13.1299 ID - Koyutürk2006 ER - TY - JOUR AU - Nijssen, S. AU - Kok, J. PY - 2005 DA - 2005// TI - The gaston tool for frequent subgraph mining JO - Electron Notes Theor Comput Sci VL - 127 UR - https://doi.org/10.1016/j.entcs.2004.12.039 DO - 10.1016/j.entcs.2004.12.039 ID - Nijssen2005 ER - TY - CHAP AU - Schmidt, M. C. AU - Samatova, N. F. PY - 2009 DA - 2009// TI - An algorithm for the discovery of phenotype related metabolic pathways BT - BIBM PB - Washington CY - DC, USA ID - Schmidt2009 ER - TY - JOUR AU - Slonim, N. AU - Elemento, O. AU - Tavazoie, S. PY - 2006 DA - 2006// TI - Ab initio genotype-phenotype association reveals intrinsic modularity in genetic networks JO - Mol Syst Biol VL - 2 UR - https://doi.org/10.1038/msb4100047 DO - 10.1038/msb4100047 ID - Slonim2006 ER - TY - JOUR AU - Levesque, M. AU - Shasha, D. AU - Kim, W. AU - Surette, M. AU - Benfey, P. PY - 2003 DA - 2003// TI - Trait-to-Gene: A computational method for predicting the function of uncharacterized genes JO - Curr Biol VL - 13 UR - https://doi.org/10.1016/S0960-9822(03)00009-5 DO - 10.1016/S0960-9822(03)00009-5 ID - Levesque2003 ER - TY - JOUR AU - Saeys, Y. AU - Inza, I. AU - Larrañaga, P. PY - 2007 DA - 2007// TI - A review of feature selection techniques in bioinformatics JO - Bioinformatics VL - 23 UR - https://doi.org/10.1093/bioinformatics/btm344 DO - 10.1093/bioinformatics/btm344 ID - Saeys2007 ER - TY - JOUR AU - Lei, Y. AU - Huan, L. PY - 2004 DA - 2004// TI - Efficient feature selection via analysis of relevance and redundancy JO - J Mach Learn Res VL - 5 ID - Lei2004 ER - TY - JOUR AU - Li, L. AU - Weinberg, C. AU - Darden, T. AU - Pedersen, L. PY - 2001 DA - 2001// TI - Gene selection for sample classification based on gene expression data: Study of sensitivity to choice of parameters of the GA/KNN method JO - Bioinformatics VL - 17 UR - https://doi.org/10.1093/bioinformatics/17.12.1131 DO - 10.1093/bioinformatics/17.12.1131 ID - Li2001 ER - TY - JOUR AU - Diaz-Uriarte, R. AU - Alvarez de Andres, S. PY - 2006 DA - 2006// TI - Gene selection and classification of microarray data using random forest JO - BMC Bioinf VL - 7 UR - https://doi.org/10.1186/1471-2105-7-3 DO - 10.1186/1471-2105-7-3 ID - Diaz-Uriarte2006 ER - TY - JOUR AU - Curtis, R. AU - Oresic, M. AU - Vidal-Puig, A. PY - 2005 DA - 2005// TI - Pathways to the analysis of microarray data JO - Trends Biotechnol VL - 23 UR - https://doi.org/10.1016/j.tibtech.2005.05.011 DO - 10.1016/j.tibtech.2005.05.011 ID - Curtis2005 ER - TY - JOUR AU - Johannes, M. AU - Brase, J. AU - Fröhlich, H. AU - Gade, S. AU - Gehrmann, M. AU - Fälth, M. AU - Sültmann, H. AU - Beißbarth, T. PY - 2010 DA - 2010// TI - Integration of pathway knowledge into a reweighted recursive feature elimination approach for risk stratification of cancer patients JO - Bioinformatics VL - 26 UR - https://doi.org/10.1093/bioinformatics/btq345 DO - 10.1093/bioinformatics/btq345 ID - Johannes2010 ER - TY - JOUR AU - Rapaport, F. AU - Zinovyev, A. AU - Dutreix, M. AU - Barillot, E. AU - Vert, J. PY - 2007 DA - 2007// TI - Classification of microarray data using gene networks JO - BMC Bioinf VL - 8 UR - https://doi.org/10.1186/1471-2105-8-35 DO - 10.1186/1471-2105-8-35 ID - Rapaport2007 ER - TY - JOUR AU - Yousef, M. AU - Ketany, M. AU - Manevitz, L. M. AU - Showe, L. C. AU - Showe, M. K. PY - 2009 DA - 2009// TI - Classification and biomarker identification using gene network modules and support vector machines JO - BMC Bioinf VL - 10 UR - https://doi.org/10.1186/1471-2105-10-337 DO - 10.1186/1471-2105-10-337 ID - Yousef2009 ER - TY - JOUR AU - Chuang, H. AU - Lee Y Eand, L. i. u. AU - Lee, D. AU - Ideker, T. PY - 2007 DA - 2007// TI - Network-based classification of breast cancer metastasis JO - Mol Syst Biol VL - 3 UR - https://doi.org/10.1038/msb4100180 DO - 10.1038/msb4100180 ID - Chuang2007 ER - TY - JOUR AU - Chen, L. AU - Xuan, J. AU - Riggins, R. AU - Clarke, R. AU - Wang, Y. PY - 2011 DA - 2011// TI - Identifying cancer biomarkers by network-constrained support vector machines JO - BMC Syst Biol VL - 5 UR - https://doi.org/10.1186/1752-0509-5-161 DO - 10.1186/1752-0509-5-161 ID - Chen2011 ER - TY - JOUR AU - Ma, S. AU - Shi, M. AU - Li, Y. AU - Yi, D. AU - Shia, B. PY - 2010 DA - 2010// TI - Incorporating gene co-expression network in identification of cancer prognosis markers JO - BMC Bioinf VL - 11 UR - https://doi.org/10.1186/1471-2105-11-271 DO - 10.1186/1471-2105-11-271 ID - Ma2010 ER - TY - JOUR AU - Kapdan, I. AU - Kargi, F. PY - 2006 DA - 2006// TI - Bio-hydrogen production from waste materials JO - Enzyme Microb Technol VL - 38 UR - https://doi.org/10.1016/j.enzmictec.2005.09.015 DO - 10.1016/j.enzmictec.2005.09.015 ID - Kapdan2006 ER - TY - JOUR AU - Nath, K. AU - Das, D. PY - 2004 DA - 2004// TI - Improvement of fermentative hydrogen production: Various approaches JO - Appl Microbiol Biotechnol VL - 65 ID - Nath2004 ER - TY - JOUR AU - Rey, F. E. AU - Heiniger, E. K. AU - Harwood, C. S. PY - 2007 DA - 2007// TI - Redirection of metabolism for biological hydrogen production JO - Appl Environ Microbiol VL - 73 UR - https://doi.org/10.1128/AEM.02565-06 DO - 10.1128/AEM.02565-06 ID - Rey2007 ER - TY - JOUR AU - Huang, Y. AU - Zong, W. AU - Yan, X. AU - Wang, R. AU - Hemme, C. AU - Zhou, J. AU - Zhou, Z. PY - 2010 DA - 2010// TI - Succession of the bacterial community and dynamics of hydrogen producers in a hydrogen-producing bioreactor JO - Appl Environ Microbiol VL - 76 UR - https://doi.org/10.1128/AEM.02444-09 DO - 10.1128/AEM.02444-09 ID - Huang2010 ER - TY - JOUR AU - Jim, K. AU - Parmar, K. AU - Singh, M. AU - Tavazoie, S. PY - 2004 DA - 2004// TI - A Cross-Genomic approach for systematic mapping of phenotypic traits to genes JO - Genome Res VL - 14 UR - https://doi.org/10.1101/gr.1586704 DO - 10.1101/gr.1586704 ID - Jim2004 ER - TY - JOUR AU - Guyon, I. AU - Weston, J. AU - Barnhill, S. AU - Vapnik, V. PY - 2002 DA - 2002// TI - Gene selection for cancer classification using support vectormachines JO - Machine Learning VL - 46 UR - https://doi.org/10.1023/A:1012487302797 DO - 10.1023/A:1012487302797 ID - Guyon2002 ER - TY - JOUR AU - Hawkes, F. AU - Dinsdale, R. AU - Hawkes, D. AU - Hussy, I. PY - 2002 DA - 2002// TI - Sustainable fermentative hydrogen production: Challenges for process optimisation JO - Int J Hydrogen Energy VL - 27 UR - https://doi.org/10.1016/S0360-3199(02)00090-3 DO - 10.1016/S0360-3199(02)00090-3 ID - Hawkes2002 ER - TY - JOUR AU - Mathews, J. AU - Wang, G. PY - 2009 DA - 2009// TI - Metabolic pathway engineering for enhanced biohydrogen production JO - Int J Hydrogen Energy VL - 34 UR - https://doi.org/10.1016/j.ijhydene.2009.05.078 DO - 10.1016/j.ijhydene.2009.05.078 ID - Mathews2009 ER - TY - JOUR AU - Li, C. AU - Fang, H. H. P. PY - 2007 DA - 2007// TI - Fermentative hydrogen production from wastewater and solid wastes by mixed cultures JO - Crit Rev Environ Sci Technol VL - 37 UR - https://doi.org/10.1080/10643380600729071 DO - 10.1080/10643380600729071 ID - Li2007 ER - TY - CHAP AU - Khanal, S. PY - 2008 DA - 2008// TI - Biohydrogen production: Fundamentals, challenges, and operation strategies for enhanced yield BT - Anaerobic Biotechnology for Bioenergy Production: Principles and Applications PB - Wiley-Blackwell CY - USA UR - https://doi.org/10.1002/9780813804545 DO - 10.1002/9780813804545 ID - Khanal2008 ER - TY - JOUR AU - Li, R. AU - Fang, H. PY - 2009 DA - 2009// TI - Heterotrophic photo fermentative hydrogen production JO - Crit Rev Environ Sci Technol VL - 39 UR - https://doi.org/10.1080/10643380802009835 DO - 10.1080/10643380802009835 ID - Li2009 ER - TY - BOOK AU - White, D. PY - 2007 DA - 2007// TI - The Physiology and Biochemistry of Prokaryotes PB - Oxford University Press CY - New York ID - White2007 ER - TY - CHAP AU - Hallenbeck, P. AU - Ghosh, D. PY - 2010 DA - 2010// TI - Improvements in fermentative biological hydrogen production through metabolic engineering BT - J Environ Manage ID - Hallenbeck2010 ER - TY - JOUR AU - Tatusov, R. L. AU - Fedorova, N. D. AU - Jackson, J. D. AU - Jacobs, A. R. AU - Kiryutin, B. AU - Koonin, E. V. AU - Krylov, D. M. AU - Mazumder, R. AU - Mekhedov, S. L. AU - Nikolskaya, A. N. AU - Rao, B. S. AU - Smirnov, S. AU - Sverdlov, A. V. AU - Vasudevan, S. AU - Wolf, Y. I. AU - Yin, J. J. AU - Natale, D. A. PY - 2003 DA - 2003// TI - The COG database: an updated version includes eukaryotes JO - BMC Bioinf VL - 4 UR - https://doi.org/10.1186/1471-2105-4-41 DO - 10.1186/1471-2105-4-41 ID - Tatusov2003 ER - TY - JOUR AU - Vignais, P. M. AU - Billoud, B. PY - 2001 DA - 2001// TI - Classification and phylogeny of hydrogenases JO - FEMS Microbiol Rev VL - 25 UR - https://doi.org/10.1111/j.1574-6976.2001.tb00587.x DO - 10.1111/j.1574-6976.2001.tb00587.x ID - Vignais2001 ER - TY - JOUR AU - Butland, G. AU - Zhang, J. w. AU - Yang, W. PY - 2006 DA - 2006// TI - Interactions of the Escherichia coli hydrogenase biosynthetic proteins: HybG complex formation JO - FEBS Lett VL - 580 UR - https://doi.org/10.1016/j.febslet.2005.12.063 DO - 10.1016/j.febslet.2005.12.063 ID - Butland2006 ER - TY - JOUR AU - McKinlay, J. AU - Harwood, C. PY - 2010 DA - 2010// TI - Clostridium ljungdahlii represents a microbial production platform based on syngas JO - Proc Natl Acad Sci VL - 107 UR - https://doi.org/10.1073/pnas.1006175107 DO - 10.1073/pnas.1006175107 ID - McKinlay2010 ER - TY - JOUR AU - Rey, F. AU - Oda, Y. AU - Harwood, C. PY - 2006 DA - 2006// TI - Regulation of uptake hydrogenase and effects of hydrogen utilization on gene expression in Rhodopseudomonas palustris JO - J Bacteriol VL - 188 UR - https://doi.org/10.1128/JB.00381-06 DO - 10.1128/JB.00381-06 ID - Rey2006 ER - TY - JOUR AU - Zhang, R. AU - Andersson, C. AU - Savchenko, A. AU - Skarina, T. AU - Evdokimova, E. AU - Beasley, S. AU - Arrowsmith, C. H. AU - Edwards, A. M. AU - Joachimiak, A. AU - Mowbray, S. L. PY - 2003 DA - 2003// TI - Structure of Escherichia coli ribose-5-phosphate isomerase: A ubiquitous enzyme of the pentose phosphate pathway and the calvin cycle JO - Structure VL - 11 UR - https://doi.org/10.1016/S0969-2126(02)00933-4 DO - 10.1016/S0969-2126(02)00933-4 ID - Zhang2003 ER - TY - JOUR AU - Das, D. AU - Veziroglu, N. PY - 2001 DA - 2001// TI - Hydrogen production by biological processes: A survey of literature JO - Int J Hydrogen Energy VL - 26 UR - https://doi.org/10.1016/S0360-3199(00)00058-6 DO - 10.1016/S0360-3199(00)00058-6 ID - Das2001 ER - TY - JOUR AU - Black, K. AU - Parsons, R. AU - Osborne, B. PY - 2002 DA - 2002// TI - Uptake and metabolism of glucose in the nostoc-gunnera symbiosis JO - New Phytol VL - 153 UR - https://doi.org/10.1046/j.0028-646X.2001.00322.x DO - 10.1046/j.0028-646X.2001.00322.x ID - Black2002 ER - TY - JOUR AU - Steffes, C. AU - Ellis, J. AU - Wu, J. PY - 1992 DA - 1992// TI - The lysP gene encodes the lysine-specific permease JO - J Bacteriol VL - 174 ID - Steffes1992 ER - TY - JOUR AU - Veit, A. AU - Akhtar, M. AU - Mizutani, T. AU - Jones, P. PY - 2008 DA - 2008// TI - Constructing and testing the thermodynamic limits of synthetic NAD(P)H:H2 pathways JO - Microb Biotechnol VL - 1 UR - https://doi.org/10.1111/j.1751-7915.2008.00033.x DO - 10.1111/j.1751-7915.2008.00033.x ID - Veit2008 ER - TY - JOUR AU - Antoni, D. AU - Zverlov, V. AU - Schwarz, W. PY - 2007 DA - 2007// TI - Biofuels from microbes JO - Appl Microbiol Biotechnol VL - 77 UR - https://doi.org/10.1007/s00253-007-1163-x DO - 10.1007/s00253-007-1163-x ID - Antoni2007 ER - TY - BOOK AU - Hart, D. PY - 1997 DA - 1997// TI - Hydrogen Power: The Commercial Future of ’the Ultimate Fuel’ PB - Financial Times Energy Publishing CY - London ID - Hart1997 ER - TY - JOUR AU - Vignais, P. M. AU - Colbeau, A. PY - 2004 DA - 2004// TI - Molecular biology of microbial hydrogenases JO - Curr Issues Mol Biol VL - 6 ID - Vignais2004 ER - TY - JOUR AU - Martins, A. AU - Shuman, S. PY - 2005 DA - 2005// TI - An end-healing enzyme from Clostridium thermocellum with 5’ kinase, 2’,3’ phosphatase, and adenylyltransferase activities JO - RNA VL - 11 UR - https://doi.org/10.1261/rna.2690505 DO - 10.1261/rna.2690505 ID - Martins2005 ER - TY - JOUR AU - Paschos, A. AU - Bauer, A. AU - Zimmermann, A. AU - Zehelein, E. AU - Böck, A. PY - 2002 DA - 2002// TI - HypF, a carbamoyl phosphate-converting enzyme involved in [NiFe] hydrogenase maturation JO - J Biol Chem VL - 277 UR - https://doi.org/10.1074/jbc.M204601200 DO - 10.1074/jbc.M204601200 ID - Paschos2002 ER - TY - JOUR AU - Härtel, U. AU - Buckel, W. PY - 1996 DA - 1996// TI - Sodium ion-dependent hydrogen production in Acidaminococcus fermentans JO - Arch Microbiol VL - 166 UR - https://doi.org/10.1007/s002030050394 DO - 10.1007/s002030050394 ID - Härtel1996 ER - TY - JOUR AU - Koskinen, P. AU - Kaksonen, A. AU - Puhakka, J. PY - 2007 DA - 2007// TI - The relationship between instability of H2 production and compositions of bacterial communities within a dark fermentation fluidised-bed bioreactor JO - Biotechnol Bioeng VL - 97 UR - https://doi.org/10.1002/bit.21299 DO - 10.1002/bit.21299 ID - Koskinen2007 ER - TY - JOUR AU - Bagramyan, K. AU - Trchounian, A. PY - 2003 DA - 2003// TI - Structural and functional features of formate hydrogen Lyase, an enzyme of mixed-acid fermentation from escherichia coli JO - Biochemistry VL - 68 ID - Bagramyan2003 ER - TY - JOUR AU - Akhtar, K. AU - Jones, P. PY - 2008 DA - 2008// TI - Engineering of a synthetic hydF–hydE–hydG–hydA operon for biohydrogen production JO - Anal Biochem VL - 373 UR - https://doi.org/10.1016/j.ab.2007.10.018 DO - 10.1016/j.ab.2007.10.018 ID - Akhtar2008 ER - TY - JOUR AU - Shomura, Y. AU - Komori, H. AU - Miyabe, N. AU - Tomiyama, M. AU - Shibata, N. AU - Higuchi, Y. PY - 2007 DA - 2007// TI - Crystal structures of hydrogenase maturation protein HypE in the apo and ATP-bound forms JO - J Mol Biol VL - 372 UR - https://doi.org/10.1016/j.jmb.2007.07.023 DO - 10.1016/j.jmb.2007.07.023 ID - Shomura2007 ER - TY - JOUR AU - Blokesch, M. AU - Albracht, S. P. J. AU - Matzanke, B. F. AU - Drapal, N. M. AU - Jacobi, A. AU - Bock, A. PY - 2004 DA - 2004// TI - The complex between hydrogenase-maturation proteins HypC and HypD is an intermediate in the supply of cyanide to the active site iron of [NiFe]-hydrogenases JO - J Mol Biol VL - 344 UR - https://doi.org/10.1016/j.jmb.2004.09.040 DO - 10.1016/j.jmb.2004.09.040 ID - Blokesch2004 ER - TY - JOUR AU - Vignais, P. AU - Billoud J Band, M. e. y. e. r. PY - 2001 DA - 2001// TI - Classification and phylogeny of hydrogenases JO - FEMS Microbiol Rev VL - 25 UR - https://doi.org/10.1111/j.1574-6976.2001.tb00587.x DO - 10.1111/j.1574-6976.2001.tb00587.x ID - Vignais2001 ER - TY - JOUR AU - Liu, X. AU - Zhu, Y. AU - Yang, S. PY - 2006 DA - 2006// TI - Construction and characterization of ack deleted mutant of Clostridium tyrobutyricum for enhanced butyric acid and hydrogen production JO - Biotechnol Prog VL - 22 UR - https://doi.org/10.1021/bp060082g DO - 10.1021/bp060082g ID - Liu2006 ER - TY - JOUR AU - Rajagopala, S. V. AU - Titz, B. AU - Goll, J. AU - Parrish, J. R. AU - Wohlbold, K. AU - McKevitt, M. T. AU - Palzkill, T. AU - Mori, H. AU - Finley, R. L. AU - Uetz, P. PY - 2007 DA - 2007// TI - The protein network of bacterial motility JO - Mol Syst Biol VL - 3 UR - https://doi.org/10.1038/msb4100166 DO - 10.1038/msb4100166 ID - Rajagopala2007 ER - TY - JOUR AU - Singh, A. H. AU - Wolf, D. M. AU - Wang, P. AU - Arkin, A. P. PY - 2008 DA - 2008// TI - Modularity of stress response evolution JO - Proc Nat Acad Sci VL - 105 UR - https://doi.org/10.1073/pnas.0709764105 DO - 10.1073/pnas.0709764105 ID - Singh2008 ER - TY - JOUR AU - Blocker, A. AU - Komoriya, K. AU - Aizawa, S. I. PY - 2003 DA - 2003// TI - Type III secretion systems and bacterial flagella: Insights into their function from structural similarities JO - Proc Nat Acad Sci USA VL - 100 UR - https://doi.org/10.1073/pnas.0535335100 DO - 10.1073/pnas.0535335100 ID - Blocker2003 ER - TY - JOUR AU - Tan, A. AU - Gilbert, D. PY - 2003 DA - 2003// TI - Ensemble machine learning on gene expression data for cancer classification JO - Applied Bioinf VL - 2 ID - Tan2003 ER - TY - JOUR AU - Butte, A. J. AU - Tamayo, P. AU - Slonim, D. AU - Golub, T. R. AU - Kohane, I. S. PY - 2000 DA - 2000// TI - Discovering functional relationships between RNA expression and chemotherapeutic susceptibility using relevance networks JO - Proc Natl Acad Sci VL - 97 UR - https://doi.org/10.1073/pnas.220392197 DO - 10.1073/pnas.220392197 ID - Butte2000 ER - TY - JOUR AU - Yanagi, Y. AU - Yoshikai, Y. AU - Leggett, K. AU - Clark, S. AU - Aleksander, I. AU - Mak, T. PY - 1984 DA - 1984// TI - A human T cell-specific cDNA clone encodes a protein having extensive homology to immunoglobulin chains JO - Nature VL - 308 UR - https://doi.org/10.1038/308145a0 DO - 10.1038/308145a0 ID - Yanagi1984 ER - TY - JOUR AU - Motz, C. AU - Martin, H. AU - Krimmer, T. AU - Rassow, J. PY - 2002 DA - 2002// TI - Bcl-2 and porin follow different pathways of TOM-dependent insertion into the mitochondrial outer membrane JO - J Mol Biol VL - 323 UR - https://doi.org/10.1016/S0022-2836(02)00995-6 DO - 10.1016/S0022-2836(02)00995-6 ID - Motz2002 ER - TY - JOUR AU - Karakas, T. AU - Maurer, U. AU - Weidmann, E. AU - Miething, C. AU - Hoelzer, D. PY - 1998 DA - 1998// TI - Bergmann: High expression of bcl-2 mRNA as a determinant of poor prognosis in acute myeloid leukemia JO - Ann Oncol VL - 9 UR - https://doi.org/10.1023/A:1008255511404 DO - 10.1023/A:1008255511404 ID - Karakas1998 ER - TY - JOUR AU - Hirota, T. AU - Morisaki, T. AU - Nishiyama, Y. AU - Marumoto, T. AU - Tada, K. AU - Hara, T. AU - Masuko, N. AU - Inagaki, M. AU - Hatakeyama, K. AU - Saya, H. PY - 2000 DA - 2000// TI - Zyxin, a regulator of actin filament assembly, targets the mitotic apparatus by interacting with h-warts/LATS1 tumor suppressor JO - J Cell Biol VL - 149 UR - https://doi.org/10.1083/jcb.149.5.1073 DO - 10.1083/jcb.149.5.1073 ID - Hirota2000 ER - TY - CHAP AU - Fang, J. AU - Grzymala-Busse, J. PY - 2006 DA - 2006// TI - Leukemia prediction from gene expression data—a rough set approach BT - Artificial Intelligence and Soft Computing–ICAISC 2006, Volume 4029 of Lecture Notes in Computer Science PB - Zakopane CY - Poland ID - Fang2006 ER - TY - BOOK AU - Pansombut, T. AU - Hendrix, W. AU - Gao, Z. J. AU - Harrison, B. E. AU - Samatova, N. F. PY - 2011 DA - 2011// TI - Biclustering-driven ensemble of bayesian belief network Classifiers for Underdetermined Problems PB - Barcelona CY - Spain ID - Pansombut2011 ER - TY - JOUR AU - Dettling, M. PY - 2004 DA - 2004// TI - BagBoosting for tumor classification with gene expression data JO - Bioinformatics VL - 20 UR - https://doi.org/10.1093/bioinformatics/bth447 DO - 10.1093/bioinformatics/bth447 ID - Dettling2004 ER - TY - JOUR AU - Zhou, Q. AU - Hong, W. AU - Luo, L. AU - Yang, F. PY - 2010 DA - 2010// TI - Gene selection using random forest and proximity differences criterion on DNA microarray data JO - JCIT VL - 5 UR - https://doi.org/10.4156/jcit.vol5.issue6.17 DO - 10.4156/jcit.vol5.issue6.17 ID - Zhou2010 ER - TY - JOUR AU - Weston, J. AU - Elisseeff, A. AU - Schölkopf, B. AU - Tipping, M. PY - 2003 DA - 2003// TI - Use of the zero-norm with linear models and kernel methods JO - J Machine Learning Res VL - 3 ID - Weston2003 ER - TY - JOUR AU - Wang, L. AU - Chu, F. AU - Xie, W. PY - 2007 DA - 2007// TI - Accurate cancer classification using expressions of very few genes JO - IEEE/ACM Trans Comput Biol Bioinfo VL - 4 UR - https://doi.org/10.1109/TCBB.2007.1006 DO - 10.1109/TCBB.2007.1006 ID - Wang2007 ER - TY - JOUR AU - Hwang, T. AU - Sun, C. H. AU - Yun, T. AU - Yi, G. S. PY - 2010 DA - 2010// TI - FiGS: a filter-based gene selection workbench for microarray data JO - BMC Bioinf VL - 11 UR - https://doi.org/10.1186/1471-2105-11-50 DO - 10.1186/1471-2105-11-50 ID - Hwang2010 ER - TY - JOUR AU - Tajunisha, N. AU - Saravanan, V. PY - 2011 DA - 2011// TI - An improved method of unsupervised sample clustering based on information genes for microarray cancer data sets JO - IJCB VL - 2 ID - Tajunisha2011 ER - TY - JOUR AU - Czajkowski, M. AU - Krȩtowski, M. PY - 2011 DA - 2011// TI - Top scoring pair decision tree for gene expression data analysis JO - Advances in experimental medicine and biology VL - 696 UR - https://doi.org/10.1007/978-1-4419-7046-6_3 DO - 10.1007/978-1-4419-7046-6_3 ID - Czajkowski2011 ER - TY - JOUR AU - Dagliyan, O. AU - Uney-Yuksektepe, F. AU - Kavakli, I. H. AU - Turkay, M. PY - 2011 DA - 2011// TI - Optimization based tumor classification from microarray gene expression data JO - PLoS ONE VL - 6 UR - https://doi.org/10.1371/journal.pone.0014579 DO - 10.1371/journal.pone.0014579 ID - Dagliyan2011 ER - TY - JOUR AU - Witten, I. H. AU - Frank, E. PY - 2002 DA - 2002// TI - Data mining: practical machine learning tools and techniques with Java implementations JO - ACM SIGMOD Record VL - 31 UR - https://doi.org/10.1145/507338.507355 DO - 10.1145/507338.507355 ID - Witten2002 ER - TY - BOOK AU - Efron, B. AU - Tibshirani, R. J. PY - 1993 DA - 1993// TI - An Introduction to the Bootstrap PB - Hall CY - New York UR - https://doi.org/10.1007/978-1-4899-4541-9 DO - 10.1007/978-1-4899-4541-9 ID - Efron1993 ER - TY - JOUR AU - Breiman, L. PY - 1996 DA - 1996// TI - Bagging predictors JO - Machine Learning VL - 24 ID - Breiman1996 ER - TY - CHAP AU - Freund, Y. AU - Schapire, R. PY - 1996 DA - 1996// TI - Experiments with a new boosting algorithm BT - International Conference on Machine Learning PB - Bari CY - Italy ID - Freund1996 ER - TY - JOUR AU - Breiman, L. PY - 2001 DA - 2001// TI - Random Forests JO - Machine Learning VL - 45 UR - https://doi.org/10.1023/A:1010933404324 DO - 10.1023/A:1010933404324 ID - Breiman2001 ER - TY - JOUR AU - Wang, L. AU - Chu, F. AU - Xie, W. PY - 2007 DA - 2007// TI - Accurate cancer classification using expressions of very few genes JO - IEEE/ACM Trans Comput Biol Bioinf VL - 4 UR - https://doi.org/10.1109/TCBB.2007.1006 DO - 10.1109/TCBB.2007.1006 ID - Wang2007 ER - TY - CHAP AU - Díaz-Uriarte, R. PY - 2004 DA - 2004// TI - Variable selection from random forests: application to gene expression data BT - Spanish Bioinformatics Conference PB - Barcelona CY - Spain ID - Díaz-Uriarte2004 ER - TY - BOOK AU - Jolliffe, I. T. AU - Stephenson, D. B. PY - 2003 DA - 2003// TI - Forecast Verification: A Practitioner’s Guide in Atmospheric Science PB - Wiley and Sons CY - Oxford ID - Jolliffe2003 ER - TY - CHAP AU - Melville, P. AU - Mooney, R. J. PY - 2004 DA - 2004// TI - Diverse ensembles for active learning BT - Proceedings of 21st International Conference on Machine Learning (ICML-2004) ID - Melville2004 ER - TY - JOUR AU - He, X. AU - Yan, S. AU - Hu, Y. AU - Niyogi, P. AU - Zhang, H. J. PY - 2005 DA - 2005// TI - Face recognition using laplacianfaces JO - IEEE Transact Pattern Anal Machine Int VL - 27 UR - https://doi.org/10.1109/TPAMI.2005.55 DO - 10.1109/TPAMI.2005.55 ID - He2005 ER - TY - JOUR AU - Hartwell, L. H. AU - Hopfield, J. J. AU - Leibler, S. AU - Murray, A. W. PY - 1999 DA - 1999// TI - From molecular to modular cell biology JO - Nature VL - 402 UR - https://doi.org/10.1038/35011540 DO - 10.1038/35011540 ID - Hartwell1999 ER - TY - BOOK AU - Breiman, L. AU - Friedman, J. AU - Olshen, R. AU - Stone, C. PY - 1984 DA - 1984// TI - Classification and Regression Trees. Monterey PB - Wadsworth and Brooks CY - CA ID - Breiman1984 ER - TY - JOUR AU - Zhang, B. AU - Park, B. AU - Karpinets, T. AU - Samatova, N. F. PY - 2008 DA - 2008// TI - From pull-down data to protein interaction networks and complexes with biological relevance JO - Bioinformatics VL - 24 UR - https://doi.org/10.1093/bioinformatics/btn036 DO - 10.1093/bioinformatics/btn036 ID - Zhang2008 ER - TY - JOUR AU - Jensen, L. J. AU - Kuhn, M. AU - Stark, M. AU - Chaffron, S. AU - Creevey, C. AU - Muller, J. AU - Doerks, T. AU - Julien, P. AU - Roth, A. AU - Simonovic, M. AU - Bork, P. PY - 2009 DA - 2009// TI - STRING 8–a global view on proteins and their functional interactions in 630 organisms JO - Nucleic Acids Res VL - 37 UR - https://doi.org/10.1093/nar/gkn760 DO - 10.1093/nar/gkn760 ID - Jensen2009 ER - TY - JOUR AU - Hendrix, W. AU - Rocha, A. AU - Padmanabhan, K. AU - Choudhary, A. AU - Scott, K. AU - Mihelcic, J. AU - Samatova, N. PY - 2011 DA - 2011// TI - DENSE: efficient and prior knowledge-driven discovery of phenotype-associated protein functional modules JO - BMC Syst Biol VL - 5 UR - https://doi.org/10.1186/1752-0509-5-172 DO - 10.1186/1752-0509-5-172 ID - Hendrix2011 ER - TY - JOUR AU - Boyle, E. I. AU - Weng, S. AU - Gollub, J. AU - Jin, H. AU - Botstein, D. AU - Cherry, J. M. AU - Sherlock, G. PY - 2004 DA - 2004// TI - GO: TermFinder-open source software for accessing gene ontology information and finding significantly enriched gene ontology terms associated with a list of genes JO - Bioinformatics VL - 20 UR - https://doi.org/10.1093/bioinformatics/bth456 DO - 10.1093/bioinformatics/bth456 ID - Boyle2004 ER -