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Table 2 Q-values of pathways detected by GIENA for the pancreatic cancer dataset

From: Gene interaction enrichment and network analysis to identify dysregulated pathways and their interactions in complex diseases

Pathway

Cooperation

Competition

Redundancy

Dependency

GSA

Glycosphingolipid biosynthesis

0.018

0.002

0.004

0.027

0.064

Classic complement activation

0.047

0.003

0.040

0.027

0.052

Classic

0.047

0.003

0.034

0.027

0.064

Classic & alternative complement

0.047

0.004

0.039

0.026

0.052

ACE2

0.047

0.004

0.027

0.026

0.064

Bisphenol A degradation

0.049

0.009

0.048

0.027

0.064

Lysine degradation

0.037

0.009

0.040

0.028

0.061

Renin-angiotensin system

0.047

0.009

0.035

0.027

0.052

Glycosphingolipid biosynthesis (neo-lactoseries)

0.018

0.026

0.004

0.027

0.064

  1. q-value < 0.01 is considered as significant, and highlighted in bold. Note none of pathways has significant q-value using GSA.