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Table 2 Genes ranked based on their treatment-frequency fold change values at 26 hours

From: Frequency-based time-series gene expression recomposition using PRIISM

Rank

Annotation

P-Value (Treatment-Frequency Fold Change, 26 Hours)

Cold Upregulation Category*[54]

1

AT1G09350: Arabidopsis thaliana Galactinol Synthase 3 (AtGolS3)

3.97E-31

COS

2

AT4G14690: Early Light-Inducible Protein 2 (ELIP2)

3.18E-28

COS

3

AT4G12470: Azelaic Acid Induced 1 (AZI1)

1.23E-25

COS

4

AT3G50970: Low Temperature-Induced 30 (LTI30)

3.62E-22

COS

5

AT1G16850: Unknown protein

7.38E-22

COS

6

AT3G22840: Early Light-Inducible Protein 1 (ELIP1)

8.66E-21

COS

7

AT1G51090: Heavy-metal-associated domain-containing

1.41E-16

COS

8

AT3G55580: Regulator of chromosome condensation (RCC1) family protein

3.62E-16

COS

9

AT5G25110: CIPK25 (CBL-Interacting Protein Kinase 25)

1.13E-13

COS

10

AT5G52310: COR78 (Cold Regulated 78)

3.25E-13

COS

11

AT1G02820: late embryogenesis abundant 3 family protein/LEA3 family protein

3.29E-13

Soil

12

AT4G30830: similar to unknown protein (AT2G24140.1)

5.57E-13

COS

13

AT2G23910: Cinnamoyl-CoA reductase-related

9.97E-13

Plate

14

AT1G48100: Glycoside hydrolase family 28 protein/polygalacturonase (pectinase) family protein

1.93E-12

COS

15

AT5G17030: UDP-Glucosyl Transferase 78D3 (UGT78D3)

3.07E-12

COS

16

AT4G33070: Pyruvate decarboxylase, putative

3.43E-12

COS

17

AT3G17130: Invertase/pectin methylesterase inhibitor family protein

4.21E-11

COS

18

AT1G11210: Similar to unknown protein (TAIR:AT1G11220.1)

1.06E-10

COS

19

AT1G62570: Flavin-monooxygenase Glucosinolates-Oxygenase 4 (FMO GS-OX4)

3.24E-10

COS

20

AT2G16890: UDP-glucoronosyl/UDP-glucosyl transferase family protein

5.52E-10

COS

21

AT4G25480: Dehydration response element B1A (DREB1A); C-Repeat Binding Factor 3 (CBF3)

6.1E-10

COS

22

AT1G20440: Cold-Regulated 47 (COR47); (RD17)

1.08E-09

COS

23

AT1G61800: Glucose-6-Phosphate/Phosphate Translocator 2 (GPT2)

1.37E-09

Plate

24

AT4G17550: Transporter-related

1.52E-09

COS

25

AT1G62710: Beta Vacuolar Processing Enzyme (BETA-VPE)

5.78E-09

COS

  1. *“ Cold Upregulation Category” indicates whether a gene was upregulated in the cold when plants were grown in soil (“Soil”), on agar plates (“Plate”), on both growth mediums (“COS”), or on neither (“Novel”) in Vogel et al’s study [54].