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Table 4 A comparison of the clock patterns between PRIISM-processed and original gene expression data

From: Frequency-based time-series gene expression recomposition using PRIISM

Gene Name

AGI Number

P-values for Warm Gene Expression Data

P-values for Cold Gene Expression Data

  

Original

Clock-Frequency (PRIISM)

Original

Clock-Frequency (PRIISM)

COR15A

AT2G42540

5.6E-17

0

0.125

0.039

COR15B

AT2G42530

0

0

0.038

4.3E-03

COR47

AT1G20440

4.7E-09

1.8E-13

0.012

3.8E-03

COR78

AT5G52310

0

0

0.013

2.3E-03

CBF1

AT4G25490

5.0E-07

7.2E-08

4.5E-04

3.8E-05

CBF2

AT4G25470

3.9E-06

1.6E-13

3.2E-08

2.2E-09

CBF3

AT4G25480

5.5E-14

5.6E-17

2.6E-07

5.0E-10

RAV1

AT1G13260

1.8E-06

3.0E-10

7.4E-05

2.8E-04

ZAT12

AT5G59820

3.4E-03

4.9E-05

1.4E-04

1.9E-05

  1. P-values (calculated using the T-test HAYSTACK function) indicate the correlation of the gene expression patterns of well-studied cold-responsive genes to pre-defined cyclic clock patterns.