Table 1 Characteristics of model size after each reconstruction step
From: i AK692: A genome-scale metabolic model of Spirulina platensis C1
Features | Numbers | ||
|---|---|---|---|
Genome information | |||
Genome size (bp) | 5,934,248 | ||
Open reading frames(ORFs) | 6,176 | ||
Annotated genes | 3,759 | ||
Reconstruction metabolic model | Draft model | Refined model | Final model |
Genes | |||
ORFs | 575 | 692 | 692 |
% ORF of genome | 9.3 | 11.2 | 11.2 |
Reactions | 1,661 | 688 | 875 |
Internal enzymatic reaction | 1,661 | 688 | 699 |
Gene-associated | 849 | 650 | 650 (93 %) |
No gene association | 812 | 38 | 49 (7 %) |
Exchange reaction | 0 | 0 | 176 |
Metabolites | 1542 | 658 | 837 |