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Table 1 Overview of the files that make up the DFSP plugin solver

From: URDME: a modular framework for stochastic simulation of reaction-transport processes in complex geometries

Directory

File

Description

urdme/build

Makefile.dfsp

Solver Makefile.

urdme/src/dfsp

dfsp.c

Solver entry point and data initialization.

 

dfsp.h

DFSP header file.

 

dfspcore.c

Main entry point for the solver.

 

dfsp_reactions.c

Simulates reaction events.

 

dfsp_diffusion.c

Simulates diffusion events.

urdme/msrc

urdme_init_dfsp.m

Matlab pre-execution script.

  1. This structure shows the design pattern for solver integration into the URDME framework (see [30]).