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Table 1 Overview of the files that make up the DFSP plugin solver

From: URDME: a modular framework for stochastic simulation of reaction-transport processes in complex geometries

Directory File Description
urdme/build Makefile.dfsp Solver Makefile.
urdme/src/dfsp dfsp.c Solver entry point and data initialization.
  dfsp.h DFSP header file.
  dfspcore.c Main entry point for the solver.
  dfsp_reactions.c Simulates reaction events.
  dfsp_diffusion.c Simulates diffusion events.
urdme/msrc urdme_init_dfsp.m Matlab pre-execution script.
  1. This structure shows the design pattern for solver integration into the URDME framework (see [30]).