|
URDME 1.1
|
MesoRD 1.0
|
STEPS 1.3
|
---|
Interface
|
Matlab & Comsol
|
Command line
|
Python
|
| |
Simple GUI (Windows)
| |
Visualization
|
Matlab & Comsol
|
OpenGL tool
|
PyOpenGL tool
|
| |
Matlab toolbox
| |
Post-processing
|
Matlab
|
3rd party
|
Python
|
SBML support
|
Conversion tool
|
SBML L2v4
|
Import module
|
|
(no geometry)
|
+ CSG geometry
|
(no geometry)
|
Edit Geometry
|
Comsol
|
SBML
|
3rd party
|
Mesh Type
|
Vertex centered
|
Uniform Cartesian
|
Body centered
|
|
Tetrahedrons
| |
Tetrahedrons
|
Algorithms
|
NSM, DFSP
|
NSM
|
Spatial-SSA
|
|
+ extendable
|
+non-local extension
| |
Propensity types
|
All
|
SBML (MathML)
|
Mass-action
|
Model Features
|
compartments
|
compartments
|
compartments
|
|
surfaces
| |
surfaces
|
|
volume diffusion
|
volume diffusion
|
volume diffusion
|
|
surface diffusion
| | |
|
directed transport
| | |
- This table summarizes the main differences and similarities between the software packages URDME, MesoRD and STEPS.