Figure 1
From: The Cell Collective: Toward an open and collaborative approach to systems biology
Construction of models prior to their simulations via built-in ChemChains. The bio-logic for each species (defined by users) is converted (automatically) to a mathematical (Boolean) expression. Each species’ expression is encoded to a C++ file, and all files are subsequently compiled into a single dynamic library (.so file) which can be read and executed by ChemChains for simulations.