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Table 4 TFs identified by network inference in terms of coverage.

From: A computational procedure for identifying master regulator candidates: a case study on diabetes progression in Goto-Kakizaki rats

4w

8w_12w

16w_20w

GK

WKY

GK

WKY

GK

WKY

TF

No. of regulated genes

TF

No. of regulated genes

TF

No. of regulated genes

TF

No. of regulated genes

TF

No. of regulated genes

TF

No. of regulated genes

Arntl

31

Max

10

Lhx5

24

Ywhae

18

Fus

10

Foxq1

32

Lhx2

22

Otx2

10

Etv1

23

Pfdn5

13

Smad5

10

Hoxa1

16

Sp2

18

Daxx

9

Ctnnb1

8

Atf1

11

Nfx1

9

Rbl2

16

Gabpa

13

Sim1

9

Rpa3

8

Cdk9

11

Hsf1

8

Zic2

12

Xpa

4

Tcf21

8

Zfp105

8

Hmgb2

11

Tlx3

8

Rorc

8

Foxs1

3

Gata5

7

Foxo3

7

Sfpq

9

Tp53

8

Tcfap4

6

  

Tcfap2c

7

Hoxc5

6

Zfp281

9

Foxs1

7

Pttg1

5

  

Meis3

5

Litaf

6

Cdk7

8

LOC679869

7

Ncoa3

4

  

Rorc

5

Nr2f2

6

Ets2

8

Cbfb

6

Ccnh

3

  

Snapc1

5

Foxo1

5

Hoxa1

8

Ctcf

6

Hif1a

3

  

Zic2

5

Msx1

5

Nfe2l2

8

Glis2

6

Junb

3

  

Meis1

4

Myocd

5

Nfil3

8

Irf7

6

Kcnip1

3

  

Pou2af1

4

Pbx1

5

Six4

8

Nfkbib

6

Mtf1

3

  

Srf

4

Tbpl1

5

Cux2

7

Nr1i2

6

Zfp148

3

  

Stox2

4

Vdr

5

Mafg

7

Hdac1

5

  
  

Tcfcp2l1

4

Hltf

4

Nfkbia

7

Rfx5

5

  
  

Gtf2h2

3

Htt

4

Pgr

7

Tle1

5

  
  

Zfx

3

LOC680117

4

Ppp1r13b

7

Xpa

5

  
    

Mbd1

4

Tbpl1

7

    
    

Parp1

4

Cbfb

6

    
    

Rreb1

4

Ezh2

6

    
    

Smarcc1

4

Hbp1

6

    
      

Junb

6

    
      

Taf13

6

    
      

Tef

6

    
  1. TFs found in both GK and WKY are indicated by bold letters.
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BMC Systems Biology

ISSN: 1752-0509

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