From: Phenotype prediction from genome-wide association studies: application to smoking behaviors
SI | Â | Prediction method | Â | Â | ||
---|---|---|---|---|---|---|
Feature selection method | # of SNP | LR | SVM | RF | EN | LDA |
LR | 100 | 0.7597 | 0.7171 | 0.7067 | 0.7670 | 0.7605 |
 | 500 | 0.8792 | 0.9139 | 0.8132 | 0.9038 | 0.8964 |
SVM | 100 | 0.6819 | 0.6421 | 0.6204 | 0.6794 | 0.6813 |
 | 500 | 0.7953 | 0.8178 | 0.6930 | 0.7943 | 0.8075 |
RF | 100 | 0.5961 | 0.6101 | 0.5980 | 0.5848 | 0.5957 |
 | 500 | 0.6185 | 0.6312 | 0.6138 | 0.6010 | 0.6210 |
EN | 100a | 0.7930 | 0.7708 | 0.7336 | 0.7929 | 0.7 937 |
 | 163a | 0.8157 | 0.8084 | 0.7454 | 0.8188 | 0.8180 |
LDA | 100 | 0.6338 | 0.5925 | 0.5807 | 0.6273 | 0.6343 |
 | 500 | 0.7387 | 0.7503 | 0.6212 | 0.7176 | 0.7464 |